RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 CACNA1EQ15878 2313 aa0.17□□□□□ -2.38
LSM6-205ENST00000507449 MORN2Q502X0 79 aa0.17□□□□□ -2.38
LSM6-205ENST00000507449 CLLU1Q5K131 121 aa0.17□□□□□ -2.38
LSM6-205ENST00000507449 SPINK6Q6UWN8 80 aa0.17□□□□□ -2.38
LSM6-205ENST00000507449 AKAP14Q86UN6 197 aa0.17□□□□□ -2.38
LSM6-205ENST00000507449 SNX29P2Q8IUI4 249 aa0.17□□□□□ -2.38
LSM6-205ENST00000507449 TAS2R8Q9NYW2 309 aa0.17□□□□□ -2.38
LSM6-205ENST00000507449 AFDNP55196 1824 aaKnown RBP0.17□□□□□ -2.38
LSM6-205ENST00000507449 TEX49A0A1B0GTD5 131 aa0.16□□□□□ -2.38
LSM6-205ENST00000507449 SLC25A6P12236 298 aa0.16□□□□□ -2.38
LSM6-205ENST00000507449 ELOF1P60002 83 aaKnown RBP0.16□□□□□ -2.38
LSM6-205ENST00000507449 ATP6V0E2Q8NHE4 81 aa0.16□□□□□ -2.38
LSM6-205ENST00000507449 SPANXA1Q9NS26 97 aa0.16□□□□□ -2.38
LSM6-205ENST00000507449 SPANXCQ9NY87 97 aa0.16□□□□□ -2.38
LSM6-205ENST00000507449 NOP16Q9Y3C1 178 aaKnown RBP0.16□□□□□ -2.38
LSM6-205ENST00000507449 PTPRMP28827 1452 aa0.16□□□□□ -2.38
LSM6-205ENST00000507449 CCDC171Q6TFL3 1326 aa0.15□□□□□ -2.38
LSM6-205ENST00000507449 SYNJ1O43426 1573 aa0.15□□□□□ -2.38
LSM6-205ENST00000507449 TRAV2A0A0B4J234 112 aa0.15□□□□□ -2.39
LSM6-205ENST00000507449 SCGB1A1P11684 91 aa0.15□□□□□ -2.39
LSM6-205ENST00000507449 EMX2Q04743 252 aa0.15□□□□□ -2.39
LSM6-205ENST00000507449 ESPL1Q14674 2120 aa0.15□□□□□ -2.39
LSM6-205ENST00000507449 OR2T2Q6IF00 324 aa0.15□□□□□ -2.39
LSM6-205ENST00000507449 ATP11AUNQ6ZP68 121 aa0.15□□□□□ -2.39
LSM6-205ENST00000507449 DYNLRB2Q8TF09 96 aa0.15□□□□□ -2.39
LSM6-205ENST00000507449 TMEM141Q96I45 108 aa0.15□□□□□ -2.39
LSM6-205ENST00000507449 NAV2Q8IVL1 2488 aa0.15□□□□□ -2.39
LSM6-205ENST00000507449 UHRF1BP1LA0JNW5 1464 aa0.15□□□□□ -2.39
LSM6-205ENST00000507449 RBBP6Q7Z6E9 1792 aaKnown RBP0.14□□□□□ -2.39
LSM6-205ENST00000507449 CASZ1Q86V15 1759 aa0.14□□□□□ -2.39
LSM6-205ENST00000507449 M0R2P5 195 aa0.14□□□□□ -2.39
LSM6-205ENST00000507449 RBP4P02753 201 aa0.14□□□□□ -2.39
LSM6-205ENST00000507449 DBIP07108 87 aaKnown RBP0.14□□□□□ -2.39
LSM6-205ENST00000507449 PYDC1Q8WXC3 89 aa0.14□□□□□ -2.39
LSM6-205ENST00000507449 MAGOHBQ96A72 148 aaKnown RBP0.14□□□□□ -2.39
LSM6-205ENST00000507449 PROK2Q9HC23 129 aa0.14□□□□□ -2.39
LSM6-205ENST00000507449 FSIP2Q5CZC0 6907 aa0.14□□□□□ -2.39
LSM6-205ENST00000507449 IFI27L1Q96BM0 104 aa0.13□□□□□ -2.39
LSM6-205ENST00000507449 DSCR8Q96T75 97 aa0.13□□□□□ -2.39
LSM6-205ENST00000507449 AIF1LQ9BQI0 150 aa0.13□□□□□ -2.39
LSM6-205ENST00000507449 VPS25Q9BRG1 176 aa0.13□□□□□ -2.39
LSM6-205ENST00000507449 TANC1Q9C0D5 1861 aa0.13□□□□□ -2.39
LSM6-205ENST00000507449 LRP1Q07954 4544 aaKnown RBP0.13□□□□□ -2.39
LSM6-205ENST00000507449 MAST4O15021 2626 aa0.13□□□□□ -2.39
LSM6-205ENST00000507449 ERCC6Q03468 1493 aa0.12□□□□□ -2.39
LSM6-205ENST00000507449 SYNE2Q8WXH0 6885 aaKnown RBP0.12□□□□□ -2.39
LSM6-205ENST00000507449 A0A087WTM6 91 aa0.12□□□□□ -2.39
LSM6-205ENST00000507449 ARPC5O15511 151 aa0.12□□□□□ -2.39
LSM6-205ENST00000507449 APOC1P02654 83 aa0.12□□□□□ -2.39
LSM6-205ENST00000507449 NPC2P61916 151 aa0.12□□□□□ -2.39
LSM6-205ENST00000507449 HIST1H1AQ02539 215 aaPredicted RBP0.12□□□□□ -2.39
LSM6-205ENST00000507449 VMO1Q7Z5L0 202 aa0.12□□□□□ -2.39
LSM6-205ENST00000507449 BET1LQ9NYM9 111 aa0.12□□□□□ -2.39
LSM6-205ENST00000507449 ABCA4P78363 2273 aa0.12□□□□□ -2.39
LSM6-205ENST00000507449 MACF1Q9UPN3 7388 aaKnown RBP0.12□□□□□ -2.39
LSM6-205ENST00000507449 PIEZO1Q92508 2521 aa0.11□□□□□ -2.39
LSM6-205ENST00000507449 TRAV12-2A0A075B6T6 113 aa0.11□□□□□ -2.39
LSM6-205ENST00000507449 J3QLW9 94 aa0.11□□□□□ -2.39
LSM6-205ENST00000507449 COA4Q9NYJ1 87 aa0.11□□□□□ -2.39
LSM6-205ENST00000507449 KDM6BO15054 1643 aa0.11□□□□□ -2.39
LSM6-205ENST00000507449 ABCA1O95477 2261 aa0.11□□□□□ -2.39
LSM6-205ENST00000507449 JMJD1CQ15652 2540 aa0.11□□□□□ -2.39
LSM6-205ENST00000507449 SPAG17Q6Q759 2223 aa0.1□□□□□ -2.39
LSM6-205ENST00000507449 ARHGEF10O15013 1369 aa0.1□□□□□ -2.39
LSM6-205ENST00000507449 ANKRD17O75179 2603 aaKnown RBP0.1□□□□□ -2.39
LSM6-205ENST00000507449 TRBV20-1A0A075B6N2 111 aa0.1□□□□□ -2.39
LSM6-205ENST00000507449 FAM236AA0A1B0GUQ0 79 aa0.1□□□□□ -2.39
LSM6-205ENST00000507449 FAM236BA0A1B0GV22 79 aa0.1□□□□□ -2.39
LSM6-205ENST00000507449 TCRBV3S1A0A5B6 114 aa0.1□□□□□ -2.39
LSM6-205ENST00000507449 ZNF670-ZNF695F2Z2N8 137 aa0.1□□□□□ -2.39
LSM6-205ENST00000507449 M0R129 80 aa0.1□□□□□ -2.39
LSM6-205ENST00000507449 YPEL1O60688 119 aa0.1□□□□□ -2.39
LSM6-205ENST00000507449 IGLC6P0CF74 106 aa0.1□□□□□ -2.39
LSM6-205ENST00000507449 NDUFA11Q86Y39 141 aa0.1□□□□□ -2.39
LSM6-205ENST00000507449 PLXNA2O75051 1894 aa0.1□□□□□ -2.39
LSM6-205ENST00000507449 OTOGQ6ZRI0 2925 aa0.09□□□□□ -2.39
LSM6-205ENST00000507449 CCL3L1P16619 93 aa0.09□□□□□ -2.4
LSM6-205ENST00000507449 CKS1BP61024 79 aa0.09□□□□□ -2.4
LSM6-205ENST00000507449 LINC01545Q5VT33 79 aa0.09□□□□□ -2.4
LSM6-205ENST00000507449 MAP2P11137 1827 aaKnown RBP0.08□□□□□ -2.4
LSM6-205ENST00000507449 TPRP12270 2363 aaKnown RBP0.08□□□□□ -2.4
LSM6-205ENST00000507449 GVQW2A0A096LPI5 108 aaPredicted RBP0.08□□□□□ -2.4
LSM6-205ENST00000507449 PITX3O75364 302 aa0.08□□□□□ -2.4
LSM6-205ENST00000507449 LINC00694P0DN24 101 aa0.08□□□□□ -2.4
LSM6-205ENST00000507449 MIC13Q5XKP0 118 aa0.08□□□□□ -2.4
LSM6-205ENST00000507449 CYP2G1PQ6ZSU1 146 aa0.08□□□□□ -2.4
LSM6-205ENST00000507449 PPP1R1CQ8WVI7 109 aa0.08□□□□□ -2.4
LSM6-205ENST00000507449 NDUFA12Q9UI09 145 aa0.08□□□□□ -2.4
LSM6-205ENST00000507449 ERG28Q9UKR5 140 aa0.08□□□□□ -2.4
LSM6-205ENST00000507449 TTC28Q96AY4 2481 aa0.07□□□□□ -2.4
LSM6-205ENST00000507449 OVOS2A0A0J9YW53 1432 aa0.07□□□□□ -2.4
LSM6-205ENST00000507449 OVOS2Q6IE36 1432 aa0.07□□□□□ -2.4
LSM6-205ENST00000507449 MCRIP1C9JLW8 97 aa0.07□□□□□ -2.4
LSM6-205ENST00000507449 CCDC179H3BU77 68 aa0.07□□□□□ -2.4
LSM6-205ENST00000507449 TSPAN19P0C672 248 aa0.07□□□□□ -2.4
LSM6-205ENST00000507449 NCS1P62166 190 aa0.07□□□□□ -2.4
LSM6-205ENST00000507449 Q96NJ1 140 aa0.07□□□□□ -2.4
LSM6-205ENST00000507449 SMIM3Q9BZL3 60 aa0.07□□□□□ -2.4
LSM6-205ENST00000507449 GSKIPQ9P0R6 139 aa0.07□□□□□ -2.4
LSM6-205ENST00000507449 SOGA1O94964 1423 aa0.06□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms