RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 SSTP61278 116 aa8.45□□□□□ -1.06
CUX1-210ENST00000497815 ZNF876PQ49A33 203 aa8.45□□□□□ -1.06
CUX1-210ENST00000497815 MUC7Q8TAX7 377 aa8.45□□□□□ -1.06
CUX1-210ENST00000497815 ISOC2Q96AB3 205 aa8.45□□□□□ -1.06
CUX1-210ENST00000497815 IL36BQ9NZH7 164 aa8.45□□□□□ -1.06
CUX1-210ENST00000497815 MUC21A0A0G2JKD1 596 aa8.44□□□□□ -1.06
CUX1-210ENST00000497815 MUC21A0A140T8X8 626 aa8.44□□□□□ -1.06
CUX1-210ENST00000497815 IGHV3-53P01767 116 aa8.44□□□□□ -1.06
CUX1-210ENST00000497815 ADCYAP1P18509 176 aa8.44□□□□□ -1.06
CUX1-210ENST00000497815 LGALS9BQ3B8N2 356 aa8.44□□□□□ -1.06
CUX1-210ENST00000497815 DNLZQ5SXM8 178 aa8.44□□□□□ -1.06
CUX1-210ENST00000497815 FAM231DQ6ZW35 169 aa8.44□□□□□ -1.06
CUX1-210ENST00000497815 LINC00612Q8N6U2 182 aa8.44□□□□□ -1.06
CUX1-210ENST00000497815 C15orf54Q8N8G6 183 aa8.44□□□□□ -1.06
CUX1-210ENST00000497815 PHLDA1Q8WV24 401 aaPredicted RBP8.44□□□□□ -1.06
CUX1-210ENST00000497815 PHLDA3Q9Y5J5 127 aa8.44□□□□□ -1.06
CUX1-210ENST00000497815 DEFB131BA0A096LNP1 70 aa8.43□□□□□ -1.06
CUX1-210ENST00000497815 TRAV10A0A0B4J240 114 aa8.43□□□□□ -1.06
CUX1-210ENST00000497815 XKRY2A2RUG3 117 aa8.43□□□□□ -1.06
CUX1-210ENST00000497815 M0R381 172 aa8.43□□□□□ -1.06
CUX1-210ENST00000497815 CXCL1P09341 107 aa8.43□□□□□ -1.06
CUX1-210ENST00000497815 SFRP2Q96HF1 295 aa8.43□□□□□ -1.06
CUX1-210ENST00000497815 OSTCQ9NRP0 149 aa8.43□□□□□ -1.06
CUX1-210ENST00000497815 STAB2Q8WWQ8 2551 aa8.43□□□□□ -1.06
CUX1-210ENST00000497815 F5H768 121 aa8.42□□□□□ -1.06
CUX1-210ENST00000497815 ATP5G1P05496 136 aa8.42□□□□□ -1.06
CUX1-210ENST00000497815 FER1L6-AS1Q8NA97 138 aa8.42□□□□□ -1.06
CUX1-210ENST00000497815 OR10G8Q8NGN5 311 aa8.42□□□□□ -1.06
CUX1-210ENST00000497815 OR10AG1Q8NH19 301 aa8.42□□□□□ -1.06
CUX1-210ENST00000497815 RASL10AQ92737 203 aa8.42□□□□□ -1.06
CUX1-210ENST00000497815 SCRT2Q9NQ03 307 aa8.42□□□□□ -1.06
CUX1-210ENST00000497815 IGLC6P0CF74 106 aa8.41□□□□□ -1.06
CUX1-210ENST00000497815 MED14OSP0DP75 135 aa8.41□□□□□ -1.06
CUX1-210ENST00000497815 SPANXN1Q5VSR9 72 aa8.41□□□□□ -1.06
CUX1-210ENST00000497815 SLC7A5P1Q8MH63 180 aa8.41□□□□□ -1.06
CUX1-210ENST00000497815 ZFP82Q8N141 532 aa8.41□□□□□ -1.06
CUX1-210ENST00000497815 SYT8Q8NBV8 401 aa8.41□□□□□ -1.06
CUX1-210ENST00000497815 OR4C5Q8NGB2 326 aa8.41□□□□□ -1.06
CUX1-210ENST00000497815 V9GYV3 84 aa8.41□□□□□ -1.06
CUX1-210ENST00000497815 IGHV3-73A0A0B4J1V6 119 aa8.4□□□□□ -1.06
CUX1-210ENST00000497815 A8MWL6 223 aa8.4□□□□□ -1.06
CUX1-210ENST00000497815 SNAI2O43623 268 aa8.4□□□□□ -1.06
CUX1-210ENST00000497815 OR5AL1P0C617 328 aa8.4□□□□□ -1.06
CUX1-210ENST00000497815 HOXA5P20719 270 aa8.4□□□□□ -1.06
CUX1-210ENST00000497815 PNRC1Q12796 327 aaPredicted RBP8.4□□□□□ -1.06
CUX1-210ENST00000497815 CEMP1Q6PRD7 247 aaPredicted RBP8.4□□□□□ -1.06
CUX1-210ENST00000497815 LYZL1Q6UWQ5 148 aa8.4□□□□□ -1.06
CUX1-210ENST00000497815 GTSF1Q8WW33 167 aa8.4□□□□□ -1.06
CUX1-210ENST00000497815 PTH2Q96A98 100 aa8.4□□□□□ -1.06
CUX1-210ENST00000497815 ZNF479Q96JC4 524 aa8.4□□□□□ -1.06
CUX1-210ENST00000497815 SSBP4Q9BWG4 385 aaPredicted RBP8.4□□□□□ -1.06
CUX1-210ENST00000497815 SEC11CQ9BY50 192 aa8.4□□□□□ -1.06
CUX1-210ENST00000497815 JPT2Q9H910 190 aa8.4□□□□□ -1.06
CUX1-210ENST00000497815 A0A1W2PPQ1 181 aa8.39□□□□□ -1.07
CUX1-210ENST00000497815 NUPR2A6NF83 97 aa8.39□□□□□ -1.07
CUX1-210ENST00000497815 IGLL5B9A064 214 aa8.39□□□□□ -1.07
CUX1-210ENST00000497815 CT83Q5H943 113 aa8.39□□□□□ -1.07
CUX1-210ENST00000497815 CFAP126Q5VTH2 177 aa8.39□□□□□ -1.07
CUX1-210ENST00000497815 POM121L12Q8N7R1 296 aa8.39□□□□□ -1.07
CUX1-210ENST00000497815 TSKUQ8WUA8 353 aa8.39□□□□□ -1.07
CUX1-210ENST00000497815 PGLYRP4Q96LB8 373 aa8.39□□□□□ -1.07
CUX1-210ENST00000497815 C18orf15Q96N68 181 aa8.39□□□□□ -1.07
CUX1-210ENST00000497815 TRAV4A0A0B4J268 109 aa8.38□□□□□ -1.07
CUX1-210ENST00000497815 TRGV4A0A0C4DH28 118 aa8.38□□□□□ -1.07
CUX1-210ENST00000497815 F2Z2F3 143 aa8.38□□□□□ -1.07
CUX1-210ENST00000497815 C3orf84H3BNL1 204 aa8.38□□□□□ -1.07
CUX1-210ENST00000497815 RS1O15537 224 aa8.38□□□□□ -1.07
CUX1-210ENST00000497815 CTRLP40313 264 aa8.38□□□□□ -1.07
CUX1-210ENST00000497815 RNF212Q495C1 297 aa8.38□□□□□ -1.07
CUX1-210ENST00000497815 CASC10Q5T4H9 136 aa8.38□□□□□ -1.07
CUX1-210ENST00000497815 SAMD10Q9BYL1 202 aa8.38□□□□□ -1.07
CUX1-210ENST00000497815 KLK5Q9Y337 293 aaPredicted RBP8.38□□□□□ -1.07
CUX1-210ENST00000497815 A0A087WWL8 130 aa8.37□□□□□ -1.07
CUX1-210ENST00000497815 A0A0J9YY99 117 aa8.37□□□□□ -1.07
CUX1-210ENST00000497815 HIGD1CA8MV81 97 aa8.37□□□□□ -1.07
CUX1-210ENST00000497815 A8MWV9 139 aa8.37□□□□□ -1.07
CUX1-210ENST00000497815 NXPH4O95158 308 aa8.37□□□□□ -1.07
CUX1-210ENST00000497815 MT-ND4LP03901 98 aa8.37□□□□□ -1.07
CUX1-210ENST00000497815 CACNG7P62955 275 aa8.37□□□□□ -1.07
CUX1-210ENST00000497815 FAM74A4Q5TZK3 123 aa8.37□□□□□ -1.07
CUX1-210ENST00000497815 TMEM88Q6PEY1 159 aa8.37□□□□□ -1.07
CUX1-210ENST00000497815 NDUFAF3Q9BU61 184 aa8.37□□□□□ -1.07
CUX1-210ENST00000497815 MSRB1Q9NZV6 116 aa8.37□□□□□ -1.07
CUX1-210ENST00000497815 IGHV4-4A0A075B6R2 117 aa8.36□□□□□ -1.07
CUX1-210ENST00000497815 TRAV26-1A0A087WT03 109 aa8.36□□□□□ -1.07
CUX1-210ENST00000497815 PPP1R2P9O14990 202 aa8.36□□□□□ -1.07
CUX1-210ENST00000497815 APOC3P02656 99 aa8.36□□□□□ -1.07
CUX1-210ENST00000497815 NTF3P20783 257 aa8.36□□□□□ -1.07
CUX1-210ENST00000497815 FHL2Q14192 279 aa8.36□□□□□ -1.07
CUX1-210ENST00000497815 TWIST1Q15672 202 aa8.36□□□□□ -1.07
CUX1-210ENST00000497815 PIK3CD-AS1Q5SR53 167 aa8.36□□□□□ -1.07
CUX1-210ENST00000497815 C10orf91Q5T1B1 145 aa8.36□□□□□ -1.07
CUX1-210ENST00000497815 C14orf178Q8N769 122 aaPredicted RBP8.36□□□□□ -1.07
CUX1-210ENST00000497815 BORCS7Q96B45 105 aa8.36□□□□□ -1.07
CUX1-210ENST00000497815 GFRA4Q9GZZ7 299 aa8.36□□□□□ -1.07
CUX1-210ENST00000497815 CARHSP1Q9Y2V2 147 aaKnown RBP8.36□□□□□ -1.07
CUX1-210ENST00000497815 MUC4Q99102 2169 aa8.35□□□□□ -1.07
CUX1-210ENST00000497815 NDUFA5Q16718 116 aa8.35□□□□□ -1.07
CUX1-210ENST00000497815 ANAPC16Q96DE5 110 aa8.35□□□□□ -1.07
CUX1-210ENST00000497815 AP1S3Q96PC3 154 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms