RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 A8MWV9 139 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 SNURFLB1AK76 121 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 M0R2P5 195 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 M0R2Z0 102 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 CRXO43186 299 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-229ENST00000490866 CA1P00915 261 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-229ENST00000490866 ARMS2P0C7Q2 107 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 IGLC6P0CF74 106 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 MIFP14174 115 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 G0S2P27469 103 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 DAZ2Q13117 558 aaKnown RBP5.09□□□□□ -1.59
SYNE1-229ENST00000490866 TWIST1Q15672 202 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 LCE1DQ5T752 114 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 TMEM88Q6PEY1 159 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 ATRAIDQ6UW56 229 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 LINC00322Q6ZN03 302 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-229ENST00000490866 ZNF705AQ6ZN79 300 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-229ENST00000490866 DEFB125Q8N687 156 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 RCHY1Q96PM5 261 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 TMEM191AQ9H0A3 160 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 SCRT2Q9NQ03 307 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 XCL2Q9UBD3 114 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 TRAPPC1Q9Y5R8 145 aa5.09□□□□□ -1.59
SYNE1-229ENST00000490866 TRAV12-2A0A075B6T6 113 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 C1orf196B1AJZ1 125 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 RHODO00212 210 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 IGHV4-30-4P0DP06 118 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 NTF3P20783 257 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 RPS10P46783 165 aaKnown RBP5.08□□□□□ -1.6
SYNE1-229ENST00000490866 SLAQ13239 276 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 KIR3DS1Q14943 382 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 HIST2H2BDQ6DRA6 164 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 LYZL1Q6UWQ5 148 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 GATD1Q8NB37 220 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 CSNK1G2-AS1Q8NCQ2 148 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 GTSF1Q8WW33 167 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 RASL10AQ92737 203 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 PGLYRP4Q96LB8 373 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 OVOL2Q9BRP0 275 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 TIMM8BQ9Y5J9 83 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-229ENST00000490866 URGCP-MRPS24S4R325 110 aa5.08□□□□□ -1.6
SYNE1-229ENST00000490866 PKD1L1Q8TDX9 2849 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 IGHV3-16A0A0C4DH30 117 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 LINC01549A6NIU2 74 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 H7C1H1 209 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 J3KRW8 73 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 K7EMI3 77 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 PHOX2AO14813 284 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 TCAPO15273 167 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 APCSP02743 223 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 RPL35AP18077 110 aaKnown RBP5.07□□□□□ -1.6
SYNE1-229ENST00000490866 TCL1AP56279 114 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 RAB4BP61018 213 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 RAB5BP61020 215 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 ZNF876PQ49A33 203 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 ZFP2Q6ZN57 461 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 CBLN2Q8IUK8 224 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-229ENST00000490866 RNF183Q96D59 192 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 MRAP2Q96G30 205 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 C9orf85Q96MD7 179 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 C18orf15Q96N68 181 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 YPEL4Q96NS1 127 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 AP1S3Q96PC3 154 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 TPPP3Q9BW30 176 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 SELENOKQ9Y6D0 94 aa5.07□□□□□ -1.6
SYNE1-229ENST00000490866 TRRAPQ9Y4A5 3859 aa5.06□□□□□ -1.6
SYNE1-229ENST00000490866 TMSB15BA0A087X1C1 80 aa5.06□□□□□ -1.6
SYNE1-229ENST00000490866 A0A1B0GXF2 115 aa5.06□□□□□ -1.6
SYNE1-229ENST00000490866 LYRM9A8MSI8 78 aa5.06□□□□□ -1.6
SYNE1-229ENST00000490866 GNRH2O43555 120 aa5.06□□□□□ -1.6
SYNE1-229ENST00000490866 SPRY2O43597 315 aa5.06□□□□□ -1.6
SYNE1-229ENST00000490866 NXPH4O95158 308 aa5.06□□□□□ -1.6
SYNE1-229ENST00000490866 NHLRC4P0CG21 123 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-229ENST00000490866 CAMPP49913 170 aa5.06□□□□□ -1.6
SYNE1-229ENST00000490866 MUC21Q5SSG8 566 aa5.06□□□□□ -1.6
SYNE1-229ENST00000490866 DPH3P1Q9H4G8 78 aa5.06□□□□□ -1.6
SYNE1-229ENST00000490866 ZMAT4Q9H898 229 aa5.06□□□□□ -1.6
SYNE1-229ENST00000490866 TGIF2-C20orf24A0A0A6YYL0 155 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 GRIFINA4D1Z8 144 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 RBMY1BA6NDE4 496 aaKnown RBP5.05□□□□□ -1.6
SYNE1-229ENST00000490866 RBMY1EA6NEQ0 496 aaKnown RBP5.05□□□□□ -1.6
SYNE1-229ENST00000490866 G3V4G9 280 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 S100A6P06703 90 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 RBMY1DP0C7P1 496 aaKnown RBP5.05□□□□□ -1.6
SYNE1-229ENST00000490866 RNASE3P12724 160 aaKnown RBP5.05□□□□□ -1.6
SYNE1-229ENST00000490866 HTN1P15515 57 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 DEFB1P60022 68 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 FABP9Q0Z7S8 132 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 OR10J3Q5JRS4 329 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 PRR9Q5T870 116 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 FAM104BQ5XKR9 115 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 ORMDL3Q8N138 153 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 C1orf158Q8N1D5 194 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 OR11H2Q8NH07 326 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 RNASE8Q8TDE3 154 aaKnown RBP5.05□□□□□ -1.6
SYNE1-229ENST00000490866 SPATA25Q9BR10 227 aa5.05□□□□□ -1.6
SYNE1-229ENST00000490866 H3BVH4 76 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 M0R381 172 aa5.04□□□□□ -1.6
SYNE1-229ENST00000490866 GIG44P09565 113 aaPredicted RBP5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 848.5 ms