RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 CRYGDP07320 174 aa11.22□□□□□ -0.61
USP40-212ENST00000473191 EVI2AP22794 236 aa11.22□□□□□ -0.61
USP40-212ENST00000473191 ERVFC1-1P60608 527 aa11.22□□□□□ -0.61
USP40-212ENST00000473191 Q8N3U1 123 aa11.22□□□□□ -0.61
USP40-212ENST00000473191 BORCS7-ASMTA0A0B4J1R7 106 aa11.21□□□□□ -0.61
USP40-212ENST00000473191 ARPC5O15511 151 aa11.21□□□□□ -0.61
USP40-212ENST00000473191 FHITP49789 147 aa11.21□□□□□ -0.61
USP40-212ENST00000473191 PPT1P50897 306 aa11.21□□□□□ -0.61
USP40-212ENST00000473191 KRTAP10-1P60331 282 aa11.21□□□□□ -0.61
USP40-212ENST00000473191 FAT1Q14517 4588 aa11.21□□□□□ -0.62
USP40-212ENST00000473191 TRAV9-2A0A087WT02 112 aa11.2□□□□□ -0.62
USP40-212ENST00000473191 PEX7O00628 323 aa11.2□□□□□ -0.62
USP40-212ENST00000473191 IFNA7P01567 189 aa11.2□□□□□ -0.62
USP40-212ENST00000473191 XGP55808 180 aa11.2□□□□□ -0.62
USP40-212ENST00000473191 ZFP69Q49AA0 526 aa11.2□□□□□ -0.62
USP40-212ENST00000473191 SAPCD1Q5SSQ6 148 aa11.2□□□□□ -0.62
USP40-212ENST00000473191 Q86TA4 180 aa11.2□□□□□ -0.62
USP40-212ENST00000473191 NFE4Q86UQ8 179 aa11.2□□□□□ -0.62
USP40-212ENST00000473191 SAMD10Q9BYL1 202 aa11.2□□□□□ -0.62
USP40-212ENST00000473191 IGHV3-38A0A0C4DH36 116 aa11.19□□□□□ -0.62
USP40-212ENST00000473191 TRBV6-4A0A1B0GX49 114 aa11.19□□□□□ -0.62
USP40-212ENST00000473191 RHOHQ15669 191 aa11.19□□□□□ -0.62
USP40-212ENST00000473191 ZC2HC1AQ96GY0 325 aa11.19□□□□□ -0.62
USP40-212ENST00000473191 PARLQ9H300 379 aa11.19□□□□□ -0.62
USP40-212ENST00000473191 PGPEP1Q9NXJ5 209 aa11.19□□□□□ -0.62
USP40-212ENST00000473191 IGHV3-30P01768 117 aa11.18□□□□□ -0.62
USP40-212ENST00000473191 IGHV3-33P01772 117 aa11.18□□□□□ -0.62
USP40-212ENST00000473191 IGHV3-30-3P0DP02 117 aa11.18□□□□□ -0.62
USP40-212ENST00000473191 IGHV3-30-5P0DP03 117 aa11.18□□□□□ -0.62
USP40-212ENST00000473191 TIRAPP58753 221 aa11.18□□□□□ -0.62
USP40-212ENST00000473191 AKR1C8PQ5T2L2 129 aa11.18□□□□□ -0.62
USP40-212ENST00000473191 PTH2Q96A98 100 aa11.18□□□□□ -0.62
USP40-212ENST00000473191 PRADC1Q9BSG0 188 aa11.18□□□□□ -0.62
USP40-212ENST00000473191 GRIFINA4D1Z8 144 aa11.17□□□□□ -0.62
USP40-212ENST00000473191 MAP1LC3B2A6NCE7 125 aa11.17□□□□□ -0.62
USP40-212ENST00000473191 FABP5P3A8MUU1 101 aa11.17□□□□□ -0.62
USP40-212ENST00000473191 H3BVH4 76 aa11.17□□□□□ -0.62
USP40-212ENST00000473191 M0R036 132 aa11.17□□□□□ -0.62
USP40-212ENST00000473191 LINC01556Q5JQF7 62 aa11.17□□□□□ -0.62
USP40-212ENST00000473191 OR10J3Q5JRS4 329 aa11.17□□□□□ -0.62
USP40-212ENST00000473191 DMRTA1Q5VZB9 504 aa11.17□□□□□ -0.62
USP40-212ENST00000473191 UFSP1Q6NVU6 142 aa11.17□□□□□ -0.62
USP40-212ENST00000473191 MAP1LC3BQ9GZQ8 125 aa11.17□□□□□ -0.62
USP40-212ENST00000473191 LRCOL1A6NCL2 159 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 GAGE12JA6NER3 117 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 KRBOX1C9JBD0 128 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 EREGO14944 169 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 SH2D1AO60880 128 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 LINC00694P0DN24 101 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 HAMPP81172 84 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 GAGE1Q13065 139 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 GAGE4Q13068 117 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 GAGE5Q13069 117 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 LGALSLQ3ZCW2 172 aaPredicted RBP11.16□□□□□ -0.62
USP40-212ENST00000473191 GAGE13Q4V321 117 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 SH2D6Q7Z4S9 175 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 TCTE3Q8IZS6 198 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 C14orf178Q8N769 122 aaPredicted RBP11.16□□□□□ -0.62
USP40-212ENST00000473191 Q9HAA7 133 aa11.16□□□□□ -0.62
USP40-212ENST00000473191 IBA57-AS1B1ANH7 110 aa11.15□□□□□ -0.62
USP40-212ENST00000473191 B4DEV8 164 aa11.15□□□□□ -0.62
USP40-212ENST00000473191 K7EP13 123 aa11.15□□□□□ -0.62
USP40-212ENST00000473191 MGST1P10620 155 aaKnown RBP11.15□□□□□ -0.62
USP40-212ENST00000473191 S100A4P26447 101 aaKnown RBP11.15□□□□□ -0.62
USP40-212ENST00000473191 ASIPP42127 132 aa11.15□□□□□ -0.62
USP40-212ENST00000473191 LELP1Q5T871 98 aa11.15□□□□□ -0.62
USP40-212ENST00000473191 OR11H4Q8NGC9 324 aa11.15□□□□□ -0.62
USP40-212ENST00000473191 ATP6V0E2Q8NHE4 81 aa11.15□□□□□ -0.62
USP40-212ENST00000473191 GTSF1LQ9H1H1 148 aa11.15□□□□□ -0.62
USP40-212ENST00000473191 DNAH8Q96JB1 4490 aa11.14□□□□□ -0.63
USP40-212ENST00000473191 TMSB15BA0A087X1C1 80 aa11.14□□□□□ -0.63
USP40-212ENST00000473191 A0A1B0GV50 99 aa11.14□□□□□ -0.63
USP40-212ENST00000473191 CIDEAO60543 219 aa11.14□□□□□ -0.63
USP40-212ENST00000473191 ARMS2P0C7Q2 107 aa11.14□□□□□ -0.63
USP40-212ENST00000473191 CDPF1Q6NVV7 123 aa11.14□□□□□ -0.63
USP40-212ENST00000473191 C10orf126Q8N4M7 172 aa11.14□□□□□ -0.63
USP40-212ENST00000473191 HIST1H2BAQ96A08 127 aa11.14□□□□□ -0.63
USP40-212ENST00000473191 IL36BQ9NZH7 164 aa11.14□□□□□ -0.63
USP40-212ENST00000473191 TRAV8-6A0A0B4J262 113 aa11.13□□□□□ -0.63
USP40-212ENST00000473191 A8MWV9 139 aa11.12□□□□□ -0.63
USP40-212ENST00000473191 C1QBP02746 253 aa11.12□□□□□ -0.63
USP40-212ENST00000473191 WFDC2Q14508 124 aa11.12□□□□□ -0.63
USP40-212ENST00000473191 CST9LP1Q5W188 147 aa11.12□□□□□ -0.63
USP40-212ENST00000473191 ZFP2Q6ZN57 461 aa11.12□□□□□ -0.63
USP40-212ENST00000473191 COX8CQ7Z4L0 72 aa11.12□□□□□ -0.63
USP40-212ENST00000473191 A0A087WWL8 130 aa11.11□□□□□ -0.63
USP40-212ENST00000473191 PAGE4O60829 102 aa11.11□□□□□ -0.63
USP40-212ENST00000473191 LTAP01374 205 aa11.11□□□□□ -0.63
USP40-212ENST00000473191 ZNF674Q2M3X9 581 aa11.11□□□□□ -0.63
USP40-212ENST00000473191 DNLZQ5SXM8 178 aa11.11□□□□□ -0.63
USP40-212ENST00000473191 FAM74A4Q5TZK3 123 aa11.11□□□□□ -0.63
USP40-212ENST00000473191 KCNRGQ8N5I3 272 aa11.11□□□□□ -0.63
USP40-212ENST00000473191 FMC1Q96HJ9 113 aa11.11□□□□□ -0.63
USP40-212ENST00000473191 DNAJC30Q96LL9 226 aa11.11□□□□□ -0.63
USP40-212ENST00000473191 NKX6-2Q9C056 277 aaPredicted RBP11.11□□□□□ -0.63
USP40-212ENST00000473191 ZFP30Q9Y2G7 519 aa11.11□□□□□ -0.63
USP40-212ENST00000473191 PSCAO43653 123 aa11.1□□□□□ -0.63
USP40-212ENST00000473191 SMR3BP02814 79 aaPredicted RBP11.1□□□□□ -0.63
USP40-212ENST00000473191 GCSHP23434 173 aa11.1□□□□□ -0.63
USP40-212ENST00000473191 UBE2G1P62253 170 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms