RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 RAB4BP61018 213 aa8.64□□□□□ -1.03
USP54-209ENST00000464635 NUTF2P61970 127 aaKnown RBP8.64□□□□□ -1.03
USP54-209ENST00000464635 ODF3L2Q3SX64 289 aa8.64□□□□□ -1.03
USP54-209ENST00000464635 PTH2Q96A98 100 aa8.64□□□□□ -1.03
USP54-209ENST00000464635 C19orf73Q9NVV2 129 aa8.64□□□□□ -1.03
USP54-209ENST00000464635 LAMTOR2Q9Y2Q5 125 aa8.64□□□□□ -1.03
USP54-209ENST00000464635 DYNC2H1Q8NCM8 4307 aaKnown RBP8.64□□□□□ -1.03
USP54-209ENST00000464635 LOC102724200A0A096LPH7 203 aaPredicted RBP8.63□□□□□ -1.03
USP54-209ENST00000464635 NXPH4O95158 308 aa8.63□□□□□ -1.03
USP54-209ENST00000464635 NTF3P20783 257 aa8.63□□□□□ -1.03
USP54-209ENST00000464635 CAMPP49913 170 aa8.63□□□□□ -1.03
USP54-209ENST00000464635 SLAQ13239 276 aa8.63□□□□□ -1.03
USP54-209ENST00000464635 ANXA2RQ3ZCQ2 193 aa8.63□□□□□ -1.03
USP54-209ENST00000464635 FAM104BQ5XKR9 115 aa8.63□□□□□ -1.03
USP54-209ENST00000464635 TMEM256Q8N2U0 113 aa8.63□□□□□ -1.03
USP54-209ENST00000464635 MUC7Q8TAX7 377 aa8.63□□□□□ -1.03
USP54-209ENST00000464635 TM2D3Q9BRN9 247 aa8.63□□□□□ -1.03
USP54-209ENST00000464635 ALKBH7Q9BT30 221 aaPredicted RBP8.63□□□□□ -1.03
USP54-209ENST00000464635 NDUFAF3Q9BU61 184 aa8.63□□□□□ -1.03
USP54-209ENST00000464635 C3orf84H3BNL1 204 aa8.62□□□□□ -1.03
USP54-209ENST00000464635 DEFB1P60022 68 aa8.62□□□□□ -1.03
USP54-209ENST00000464635 GFI1BQ5VTD9 330 aa8.62□□□□□ -1.03
USP54-209ENST00000464635 SMIM15Q7Z3B0 74 aa8.62□□□□□ -1.03
USP54-209ENST00000464635 TRPT1Q86TN4 253 aaKnown RBP8.62□□□□□ -1.03
USP54-209ENST00000464635 DEFB125Q8N687 156 aa8.62□□□□□ -1.03
USP54-209ENST00000464635 SELENOKQ9Y6D0 94 aa8.62□□□□□ -1.03
USP54-209ENST00000464635 AGRNO00468 2067 aa8.61□□□□□ -1.03
USP54-209ENST00000464635 DNAH7Q8WXX0 4024 aa8.61□□□□□ -1.03
USP54-209ENST00000464635 TRGV11A0A075B6L2 103 aa8.61□□□□□ -1.03
USP54-209ENST00000464635 IGHV1OR15-1A0A075B7D0 117 aa8.61□□□□□ -1.03
USP54-209ENST00000464635 TMSB15BA0A087X1C1 80 aa8.61□□□□□ -1.03
USP54-209ENST00000464635 A8MZ25 164 aa8.61□□□□□ -1.03
USP54-209ENST00000464635 CRXO43186 299 aaPredicted RBP8.61□□□□□ -1.03
USP54-209ENST00000464635 S100A4P26447 101 aaKnown RBP8.61□□□□□ -1.03
USP54-209ENST00000464635 TWIST1Q15672 202 aa8.61□□□□□ -1.03
USP54-209ENST00000464635 CASC10Q5T4H9 136 aa8.61□□□□□ -1.03
USP54-209ENST00000464635 MORN3Q6PF18 240 aaPredicted RBP8.61□□□□□ -1.03
USP54-209ENST00000464635 STHQ8IWL8 128 aa8.61□□□□□ -1.03
USP54-209ENST00000464635 HIST3H2BBQ8N257 126 aa8.61□□□□□ -1.03
USP54-209ENST00000464635 ZMAT4Q9H898 229 aa8.61□□□□□ -1.03
USP54-209ENST00000464635 RYR2Q92736 4967 aa8.61□□□□□ -1.03
USP54-209ENST00000464635 SACSQ9NZJ4 4579 aa8.61□□□□□ -1.03
USP54-209ENST00000464635 GRIFINA4D1Z8 144 aa8.6□□□□□ -1.03
USP54-209ENST00000464635 PRSS47A8MTI9 375 aa8.6□□□□□ -1.03
USP54-209ENST00000464635 RNASE3P12724 160 aaKnown RBP8.6□□□□□ -1.03
USP54-209ENST00000464635 SRIP30626 198 aa8.6□□□□□ -1.03
USP54-209ENST00000464635 POM121L12Q8N7R1 296 aa8.6□□□□□ -1.03
USP54-209ENST00000464635 C9orf85Q96MD7 179 aa8.6□□□□□ -1.03
USP54-209ENST00000464635 C1QTNF4Q9BXJ3 329 aa8.6□□□□□ -1.03
USP54-209ENST00000464635 WFDC10AQ9H1F0 79 aa8.6□□□□□ -1.03
USP54-209ENST00000464635 RETNQ9HD89 108 aa8.6□□□□□ -1.03
USP54-209ENST00000464635 TENM2Q9NT68 2774 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 TRAV12-3A0A0B4J271 114 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 IGHV3-16A0A0C4DH30 117 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 KNCNA6PVL3 124 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 PRB4P10163 310 aaPredicted RBP8.59□□□□□ -1.03
USP54-209ENST00000464635 PMCHP20382 165 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 S100A2P29034 98 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 SPINK13Q1W4C9 94 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 SPANXN1Q5VSR9 72 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 ZFAND6Q6FIF0 208 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 C18orf32Q8TCD1 76 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 TMEM18Q96B42 140 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 CHCHD1Q96BP2 118 aaKnown RBP8.59□□□□□ -1.03
USP54-209ENST00000464635 TPPP3Q9BW30 176 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 EDA2RQ9HAV5 297 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 PHLDA3Q9Y5J5 127 aa8.59□□□□□ -1.03
USP54-209ENST00000464635 M0R2Z0 102 aa8.58□□□□□ -1.04
USP54-209ENST00000464635 PPP1R17O96001 155 aa8.58□□□□□ -1.04
USP54-209ENST00000464635 CD7P09564 240 aa8.58□□□□□ -1.04
USP54-209ENST00000464635 RAB4AP20338 218 aa8.58□□□□□ -1.04
USP54-209ENST00000464635 KIR3DS1Q14943 382 aa8.58□□□□□ -1.04
USP54-209ENST00000464635 GTSCR1Q86UQ5 136 aa8.58□□□□□ -1.04
USP54-209ENST00000464635 BAGE3Q86Y29 109 aa8.58□□□□□ -1.04
USP54-209ENST00000464635 ORMDL3Q8N138 153 aa8.58□□□□□ -1.04
USP54-209ENST00000464635 GSN-AS1Q9NRJ2 163 aa8.58□□□□□ -1.04
USP54-209ENST00000464635 STARD9Q9P2P6 4700 aa8.57□□□□□ -1.04
USP54-209ENST00000464635 RBMY1BA6NDE4 496 aaKnown RBP8.57□□□□□ -1.04
USP54-209ENST00000464635 RBMY1EA6NEQ0 496 aaKnown RBP8.57□□□□□ -1.04
USP54-209ENST00000464635 GNRH2O43555 120 aa8.57□□□□□ -1.04
USP54-209ENST00000464635 INSP01308 110 aa8.57□□□□□ -1.04
USP54-209ENST00000464635 RBMY1DP0C7P1 496 aaKnown RBP8.57□□□□□ -1.04
USP54-209ENST00000464635 SYT8Q8NBV8 401 aa8.57□□□□□ -1.04
USP54-209ENST00000464635 OR10AG1Q8NH19 301 aa8.57□□□□□ -1.04
USP54-209ENST00000464635 MRAP2Q96G30 205 aa8.57□□□□□ -1.04
USP54-209ENST00000464635 SPATA25Q9BR10 227 aa8.57□□□□□ -1.04
USP54-209ENST00000464635 SPXQ9BT56 116 aa8.57□□□□□ -1.04
USP54-209ENST00000464635 H3BVH4 76 aa8.56□□□□□ -1.04
USP54-209ENST00000464635 M0R381 172 aa8.56□□□□□ -1.04
USP54-209ENST00000464635 KIAA1644Q3SXP7 199 aa8.56□□□□□ -1.04
USP54-209ENST00000464635 MRPL51Q4U2R6 128 aaKnown RBP8.56□□□□□ -1.04
USP54-209ENST00000464635 Q6ZQT7 251 aa8.56□□□□□ -1.04
USP54-209ENST00000464635 RNF185Q96GF1 192 aa8.56□□□□□ -1.04
USP54-209ENST00000464635 DPH3P1Q9H4G8 78 aa8.56□□□□□ -1.04
USP54-209ENST00000464635 NAGKQ9UJ70 344 aa8.56□□□□□ -1.04
USP54-209ENST00000464635 TRAV12-2A0A075B6T6 113 aa8.55□□□□□ -1.04
USP54-209ENST00000464635 LINC01546A6NGU7 62 aa8.55□□□□□ -1.04
USP54-209ENST00000464635 IFITM10A6NMD0 228 aa8.55□□□□□ -1.04
USP54-209ENST00000464635 J3KRW8 73 aa8.55□□□□□ -1.04
USP54-209ENST00000464635 K7EMI3 77 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms