RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 A0A0C4DFX4 3053 aa2.05□□□□□ -2.08
VPS41-210ENST00000462429 PLXNB1O43157 2135 aa2.05□□□□□ -2.08
VPS41-210ENST00000462429 MAP1BP46821 2468 aaKnown RBP2.05□□□□□ -2.08
VPS41-210ENST00000462429 TRAV30A0A087WSZ9 112 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 ZNF727A8MUV8 499 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 GGTLC3B5MD39 225 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 BUB1B-PAK6H3BSN5 160 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 CNIH1O95406 144 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 IGLV6-57P01721 117 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 OR13C7P0DN81 318 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 BCL2P10415 239 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 DEFA4P12838 97 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 EFNA4P52798 201 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 CEBPGP53567 150 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 B2MP61769 119 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 RPL30P62888 115 aaKnown RBP2.04□□□□□ -2.08
VPS41-210ENST00000462429 MEF2BQ02080 365 aaPredicted RBP2.04□□□□□ -2.08
VPS41-210ENST00000462429 CHD3Q12873 2000 aaKnown RBP2.04□□□□□ -2.08
VPS41-210ENST00000462429 RPL39P5Q59GN2 51 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 MINOS1Q5TGZ0 78 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 LCN15Q6UWW0 184 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 IQCF2Q8IXL9 164 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 ZNF439Q8NDP4 499 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 CLDND2Q8NHS1 167 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 TMEM167AQ8TBQ9 72 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 MALSU1Q96EH3 234 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 MRPL32Q9BYC8 188 aaKnown RBP2.04□□□□□ -2.08
VPS41-210ENST00000462429 ZFHX2Q9C0A1 2572 aaPredicted RBP2.04□□□□□ -2.08
VPS41-210ENST00000462429 SH3BGRL3Q9H299 93 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 BIN3Q9NQY0 253 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 GNG13Q9P2W3 67 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 MINOS1-NBL1R4GNA1 71 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 VPS13AQ96RL7 3174 aa2.04□□□□□ -2.08
VPS41-210ENST00000462429 CUL9Q8IWT3 2517 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 DOCK11Q5JSL3 2073 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 TANC2Q9HCD6 1990 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 TRBV24-1A0A075B6N3 115 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 TEX50A0A1B0GTY4 177 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 A0A1B0GV50 99 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 MDFIC2A0A1B0GVS7 189 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 C7orf77A4D0Y5 90 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 PPP5D1E7EU14 171 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 H3BQ15 152 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 LECT2O14960 151 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 SH2D1AO60880 128 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 LTAP01374 205 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 IGHV3-7P01780 117 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 S100A8P05109 93 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 SRP19P09132 144 aaKnown RBP2.03□□□□□ -2.08
VPS41-210ENST00000462429 SAA1P0DJI8 122 aaPredicted RBP2.03□□□□□ -2.08
VPS41-210ENST00000462429 C8orf88P0DMB2 117 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 CD99P14209 185 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 HIST1H1BP16401 226 aaKnown RBP2.03□□□□□ -2.08
VPS41-210ENST00000462429 CCL3L1P16619 93 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 COL8A2P25067 703 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 SRP14P37108 136 aaKnown RBP2.03□□□□□ -2.08
VPS41-210ENST00000462429 RPL27AP46776 148 aaKnown RBP2.03□□□□□ -2.08
VPS41-210ENST00000462429 RUNX1Q01196 453 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 MMDQ15546 238 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 AKIRIN2Q53H80 203 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 FAM201AQ5SY85 155 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 FAM78BQ5VT40 261 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 SPATA31B1PQ5VZV4 182 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 Q6ZQT7 251 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 CYP2G1PQ6ZSU1 146 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 ZNF664Q8N3J9 261 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 RPP25LQ8N5L8 163 aaKnown RBP2.03□□□□□ -2.08
VPS41-210ENST00000462429 TEX29Q8N6K0 151 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 LY6G5BQ8NDX9 201 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 OR11H6Q8NGC7 330 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 OR2T10Q8NGZ9 312 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 HIST1H2BAQ96A08 127 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 SMIM12Q96EX1 92 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 IMMP2LQ96T52 175 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 SMIM7Q9BQ49 75 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 TM2D3Q9BRN9 247 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 NDUFA4L2Q9NRX3 87 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 DOK5Q9P104 306 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 PXMP4Q9Y6I8 212 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 LY96Q9Y6Y9 160 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 RP1L1Q8IWN7 2480 aaPredicted RBP2.03□□□□□ -2.08
VPS41-210ENST00000462429 MUC6Q6W4X9 2439 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 POLEQ07864 2286 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 ICE1Q9Y2F5 2266 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 CADP27708 2225 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 USF3Q68DE3 2245 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 DSCAMO60469 2012 aa2.03□□□□□ -2.08
VPS41-210ENST00000462429 MUC3AQ02505 3323 aa2.02□□□□□ -2.09
VPS41-210ENST00000462429 GVINP1Q7Z2Y8 2422 aa2.02□□□□□ -2.09
VPS41-210ENST00000462429 CEP250Q9BV73 2442 aa2.02□□□□□ -2.09
VPS41-210ENST00000462429 APC2O95996 2303 aa2.02□□□□□ -2.09
VPS41-210ENST00000462429 MYO15AQ9UKN7 3530 aa2.02□□□□□ -2.09
VPS41-210ENST00000462429 SPEGQ15772 3267 aa2.02□□□□□ -2.09
VPS41-210ENST00000462429 TRAV9-1A0A075B6T8 112 aa2.02□□□□□ -2.09
VPS41-210ENST00000462429 A0A1W2PRE2 83 aa2.02□□□□□ -2.09
VPS41-210ENST00000462429 TCRBV4S1A1TA0A5B7 111 aa2.02□□□□□ -2.09
VPS41-210ENST00000462429 H7BYZ3 331 aa2.02□□□□□ -2.09
VPS41-210ENST00000462429 M0QZK8 103 aa2.02□□□□□ -2.09
VPS41-210ENST00000462429 HYPMO75409 117 aa2.02□□□□□ -2.09
VPS41-210ENST00000462429 IGKV1-16P04430 117 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms