RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 C3orf56Q8N813 242 aa8.91□□□□□ -0.98
CPSF3-202ENST00000460593 COLQQ9Y215 455 aaPredicted RBP8.91□□□□□ -0.98
CPSF3-202ENST00000460593 RNF223E7ERA6 249 aa8.91□□□□□ -0.98
CPSF3-202ENST00000460593 TMEM170BQ5T4T1 132 aa8.91□□□□□ -0.98
CPSF3-202ENST00000460593 PTPRZ1P23471 2315 aaPredicted RBP8.9□□□□□ -0.98
CPSF3-202ENST00000460593 EIF4EBP3O60516 100 aaPredicted RBP8.9□□□□□ -0.98
CPSF3-202ENST00000460593 SRSF2Q01130 221 aaKnown RBP8.9□□□□□ -0.98
CPSF3-202ENST00000460593 TSHBP01222 138 aa8.9□□□□□ -0.98
CPSF3-202ENST00000460593 S100A4P26447 101 aaKnown RBP8.9□□□□□ -0.98
CPSF3-202ENST00000460593 JPT2Q9H910 190 aa8.9□□□□□ -0.98
CPSF3-202ENST00000460593 TLN1Q9Y490 2541 aaKnown RBP8.9□□□□□ -0.99
CPSF3-202ENST00000460593 GNRH2O43555 120 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 GAGE5Q13069 117 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 GAGE6Q13070 117 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 OPRPNQ99935 248 aaPredicted RBP8.89□□□□□ -0.99
CPSF3-202ENST00000460593 COL12A1Q99715 3063 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 CLPSL1A2RUU4 121 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 G3V318 75 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 SLC25A20O43772 301 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 ORMDL2Q53FV1 153 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 COL6A6A6NMZ7 2263 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 IGLV4-69A0A075B6H9 119 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 LINC01619G3V211 115 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 IGHV4-39P01824 125 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 SHISA2Q6UWI4 295 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 NTN5Q8WTR8 489 aaPredicted RBP8.89□□□□□ -0.99
CPSF3-202ENST00000460593 C20orf173Q96LM9 149 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 ZFAND3Q9H8U3 227 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 TP53TG1Q9Y2A0 90 aa8.89□□□□□ -0.99
CPSF3-202ENST00000460593 F6UB75 175 aa8.88□□□□□ -0.99
CPSF3-202ENST00000460593 IGHV3-30P01768 117 aa8.88□□□□□ -0.99
CPSF3-202ENST00000460593 IGHV3-30-5P0DP03 117 aa8.88□□□□□ -0.99
CPSF3-202ENST00000460593 PLA2G2CQ5R387 149 aa8.88□□□□□ -0.99
CPSF3-202ENST00000460593 LINC00527Q9UJ94 153 aa8.88□□□□□ -0.99
CPSF3-202ENST00000460593 OTOGLQ3ZCN5 2332 aa8.88□□□□□ -0.99
CPSF3-202ENST00000460593 IGHV7-81A0A0B4J1V7 117 aa8.88□□□□□ -0.99
CPSF3-202ENST00000460593 NPBQ8NG41 125 aa8.88□□□□□ -0.99
CPSF3-202ENST00000460593 FAM57AQ8TBR7 257 aa8.88□□□□□ -0.99
CPSF3-202ENST00000460593 SLC50A1Q9BRV3 221 aa8.88□□□□□ -0.99
CPSF3-202ENST00000460593 MAP1AP78559 2803 aaPredicted RBP8.88□□□□□ -0.99
CPSF3-202ENST00000460593 C10orf126Q8N4M7 172 aa8.87□□□□□ -0.99
CPSF3-202ENST00000460593 RNF5Q99942 180 aa8.87□□□□□ -0.99
CPSF3-202ENST00000460593 ZNF580Q9UK33 172 aa8.87□□□□□ -0.99
CPSF3-202ENST00000460593 TEX49A0A1B0GTD5 131 aa8.87□□□□□ -0.99
CPSF3-202ENST00000460593 A4D1N5 150 aa8.87□□□□□ -0.99
CPSF3-202ENST00000460593 SMIM20Q8N5G0 67 aa8.87□□□□□ -0.99
CPSF3-202ENST00000460593 LINC01560Q8TB33 94 aa8.87□□□□□ -0.99
CPSF3-202ENST00000460593 CITED1Q99966 193 aa8.87□□□□□ -0.99
CPSF3-202ENST00000460593 PHLDA3Q9Y5J5 127 aa8.87□□□□□ -0.99
CPSF3-202ENST00000460593 TRAV2A0A0B4J234 112 aa8.87□□□□□ -0.99
CPSF3-202ENST00000460593 ZNRF2Q8NHG8 242 aa8.87□□□□□ -0.99
CPSF3-202ENST00000460593 C16orf92Q96LL3 132 aa8.87□□□□□ -0.99
CPSF3-202ENST00000460593 HRNRQ86YZ3 2850 aaPredicted RBP8.86□□□□□ -0.99
CPSF3-202ENST00000460593 MUC4Q99102 2169 aa8.86□□□□□ -0.99
CPSF3-202ENST00000460593 ADARB2-AS1A8MUL3 147 aa8.86□□□□□ -0.99
CPSF3-202ENST00000460593 Q6ZS92 163 aa8.86□□□□□ -0.99
CPSF3-202ENST00000460593 PRO1854Q9UHT4 67 aa8.86□□□□□ -0.99
CPSF3-202ENST00000460593 GAGE2BQ13066 116 aa8.86□□□□□ -0.99
CPSF3-202ENST00000460593 Q1RN00 199 aa8.86□□□□□ -0.99
CPSF3-202ENST00000460593 GAGE2EQ4V326 116 aa8.86□□□□□ -0.99
CPSF3-202ENST00000460593 CCDC140Q96MF4 163 aa8.86□□□□□ -0.99
CPSF3-202ENST00000460593 GAGE2DQ9UEU5 116 aa8.86□□□□□ -0.99
CPSF3-202ENST00000460593 SPTAN1Q13813 2472 aaKnown RBP8.86□□□□□ -0.99
CPSF3-202ENST00000460593 A0A087WWL8 130 aa8.85□□□□□ -0.99
CPSF3-202ENST00000460593 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.85□□□□□ -0.99
CPSF3-202ENST00000460593 RNASE4P34096 147 aaKnown RBP8.85□□□□□ -0.99
CPSF3-202ENST00000460593 NDUFV3P56181 108 aaKnown RBP8.85□□□□□ -0.99
CPSF3-202ENST00000460593 HERV-K104P63124 156 aa8.85□□□□□ -0.99
CPSF3-202ENST00000460593 TCF15Q12870 199 aa8.85□□□□□ -0.99
CPSF3-202ENST00000460593 TMEM190Q8WZ59 177 aa8.85□□□□□ -0.99
CPSF3-202ENST00000460593 DPH3P1Q9H4G8 78 aa8.85□□□□□ -0.99
CPSF3-202ENST00000460593 CUBNO60494 3623 aa8.85□□□□□ -0.99
CPSF3-202ENST00000460593 ATP6V0E1O15342 81 aa8.85□□□□□ -0.99
CPSF3-202ENST00000460593 SNCGO76070 127 aa8.85□□□□□ -0.99
CPSF3-202ENST00000460593 GRNP28799 593 aaKnown RBP8.85□□□□□ -0.99
CPSF3-202ENST00000460593 PRR30Q53SZ7 412 aaPredicted RBP8.85□□□□□ -0.99
CPSF3-202ENST00000460593 SBSPONQ8IVN8 264 aa8.85□□□□□ -0.99
CPSF3-202ENST00000460593 Q8N1Y9 231 aa8.85□□□□□ -0.99
CPSF3-202ENST00000460593 GPHB5Q86YW7 130 aa8.84□□□□□ -0.99
CPSF3-202ENST00000460593 RBAKDNA6NC62 111 aa8.84□□□□□ -0.99
CPSF3-202ENST00000460593 TTC32Q5I0X7 151 aa8.84□□□□□ -0.99
CPSF3-202ENST00000460593 FAM159AQ6UWV7 190 aa8.84□□□□□ -0.99
CPSF3-202ENST00000460593 Q6ZSV7 163 aa8.84□□□□□ -0.99
CPSF3-202ENST00000460593 SORL1Q92673 2214 aa8.84□□□□□ -0.99
CPSF3-202ENST00000460593 IGHV4-4A0A075B6R2 117 aa8.83□□□□□ -1
CPSF3-202ENST00000460593 NPC2P61916 151 aa8.83□□□□□ -1
CPSF3-202ENST00000460593 RHODO00212 210 aa8.83□□□□□ -1
CPSF3-202ENST00000460593 LYRM7Q5U5X0 104 aa8.83□□□□□ -1
CPSF3-202ENST00000460593 VMO1Q7Z5L0 202 aa8.83□□□□□ -1
CPSF3-202ENST00000460593 SLC25A29Q8N8R3 303 aa8.83□□□□□ -1
CPSF3-202ENST00000460593 ZNF256Q9Y2P7 627 aaPredicted RBP8.83□□□□□ -1
CPSF3-202ENST00000460593 ZFHX2Q9C0A1 2572 aaPredicted RBP8.83□□□□□ -1
CPSF3-202ENST00000460593 F5H697 171 aa8.83□□□□□ -1
CPSF3-202ENST00000460593 RPL11P62913 178 aaKnown RBP8.83□□□□□ -1
CPSF3-202ENST00000460593 MUSTN1Q8IVN3 82 aa8.83□□□□□ -1
CPSF3-202ENST00000460593 ZFAND2AQ8N6M9 145 aa8.83□□□□□ -1
CPSF3-202ENST00000460593 TIMD4Q96H15 378 aa8.83□□□□□ -1
CPSF3-202ENST00000460593 AMELXQ99217 191 aa8.83□□□□□ -1
CPSF3-202ENST00000460593 VCX2Q9H322 139 aa8.83□□□□□ -1
CPSF3-202ENST00000460593 CEP295Q9C0D2 2601 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms