RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 CELA1Q9UNI1 258 aa9.34□□□□□ -0.91
VPS33A-202ENST00000451053 GRIFINA4D1Z8 144 aa9.33□□□□□ -0.92
VPS33A-202ENST00000451053 IGLC6P0CF74 106 aa9.33□□□□□ -0.92
VPS33A-202ENST00000451053 GZMBP10144 247 aa9.33□□□□□ -0.92
VPS33A-202ENST00000451053 CTRLP40313 264 aa9.33□□□□□ -0.92
VPS33A-202ENST00000451053 GTSF1Q8WW33 167 aa9.33□□□□□ -0.92
VPS33A-202ENST00000451053 C16orf74Q96GX8 76 aa9.33□□□□□ -0.92
VPS33A-202ENST00000451053 URGCP-MRPS24S4R325 110 aa9.33□□□□□ -0.92
VPS33A-202ENST00000451053 TRBV24-1A0A075B6N3 115 aa9.32□□□□□ -0.92
VPS33A-202ENST00000451053 OR5AL1P0C617 328 aa9.32□□□□□ -0.92
VPS33A-202ENST00000451053 ZNF415Q09FC8 603 aa9.32□□□□□ -0.92
VPS33A-202ENST00000451053 ELOBQ15370 118 aa9.32□□□□□ -0.92
VPS33A-202ENST00000451053 ZNF493Q6ZR52 646 aa9.32□□□□□ -0.92
VPS33A-202ENST00000451053 ATP5L2Q7Z4Y8 100 aa9.32□□□□□ -0.92
VPS33A-202ENST00000451053 C11orf72Q8NBR9 251 aa9.32□□□□□ -0.92
VPS33A-202ENST00000451053 NUP35Q8NFH5 326 aa9.32□□□□□ -0.92
VPS33A-202ENST00000451053 IL17DQ8TAD2 202 aa9.32□□□□□ -0.92
VPS33A-202ENST00000451053 WWC2-AS2Q96NR7 200 aa9.32□□□□□ -0.92
VPS33A-202ENST00000451053 TPPP3Q9BW30 176 aa9.32□□□□□ -0.92
VPS33A-202ENST00000451053 IGHV3-16A0A0C4DH30 117 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 A0A1B0GUT8 65 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 A0A1B0GW15 77 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 H3BVH4 76 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 GNRH2O43555 120 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 SNAI2O43623 268 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 S100A8P05109 93 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 FAM3BP58499 235 aaPredicted RBP9.31□□□□□ -0.92
VPS33A-202ENST00000451053 NANOS2P60321 138 aaKnown RBP9.31□□□□□ -0.92
VPS33A-202ENST00000451053 CACNG7P62955 275 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 RIGQ13278 110 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 FAM222AQ5U5X8 452 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 WDR73Q6P4I2 378 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 PGLYRP4Q96LB8 373 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 SSBP4Q9BWG4 385 aaPredicted RBP9.31□□□□□ -0.92
VPS33A-202ENST00000451053 GSN-AS1Q9NRJ2 163 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 DKK2Q9UBU2 259 aa9.31□□□□□ -0.92
VPS33A-202ENST00000451053 TGP01266 2768 aa9.3□□□□□ -0.92
VPS33A-202ENST00000451053 ARMS2P0C7Q2 107 aa9.3□□□□□ -0.92
VPS33A-202ENST00000451053 COX19Q49B96 90 aa9.3□□□□□ -0.92
VPS33A-202ENST00000451053 RASL11AQ6T310 242 aa9.3□□□□□ -0.92
VPS33A-202ENST00000451053 LYZL1Q6UWQ5 148 aa9.3□□□□□ -0.92
VPS33A-202ENST00000451053 C11orf45Q8TAV5 145 aa9.3□□□□□ -0.92
VPS33A-202ENST00000451053 NOP10Q9NPE3 64 aaKnown RBP9.3□□□□□ -0.92
VPS33A-202ENST00000451053 MDFICQ9P1T7 246 aa9.3□□□□□ -0.92
VPS33A-202ENST00000451053 PHLDA3Q9Y5J5 127 aa9.3□□□□□ -0.92
VPS33A-202ENST00000451053 TIMM8BQ9Y5J9 83 aaPredicted RBP9.3□□□□□ -0.92
VPS33A-202ENST00000451053 SNURFLB1AK76 121 aa9.29□□□□□ -0.92
VPS33A-202ENST00000451053 SPART-AS1P0CW21 52 aa9.29□□□□□ -0.92
VPS33A-202ENST00000451053 RNASE3P12724 160 aaKnown RBP9.29□□□□□ -0.92
VPS33A-202ENST00000451053 ZNF575Q86XF7 245 aa9.29□□□□□ -0.92
VPS33A-202ENST00000451053 ZFP82Q8N141 532 aa9.29□□□□□ -0.92
VPS33A-202ENST00000451053 SYT8Q8NBV8 401 aa9.29□□□□□ -0.92
VPS33A-202ENST00000451053 C9orf85Q96MD7 179 aa9.29□□□□□ -0.92
VPS33A-202ENST00000451053 YPEL4Q96NS1 127 aa9.29□□□□□ -0.92
VPS33A-202ENST00000451053 SPXQ9BT56 116 aa9.29□□□□□ -0.92
VPS33A-202ENST00000451053 CNFNQ9BYD5 112 aa9.29□□□□□ -0.92
VPS33A-202ENST00000451053 SCRT2Q9NQ03 307 aa9.29□□□□□ -0.92
VPS33A-202ENST00000451053 TGIF2-C20orf24A0A0A6YYL0 155 aa9.28□□□□□ -0.92
VPS33A-202ENST00000451053 LYRM9A8MSI8 78 aa9.28□□□□□ -0.92
VPS33A-202ENST00000451053 HBBP68871 147 aa9.28□□□□□ -0.92
VPS33A-202ENST00000451053 C12orf74Q32Q52 190 aa9.28□□□□□ -0.92
VPS33A-202ENST00000451053 SPANXN1Q5VSR9 72 aa9.28□□□□□ -0.92
VPS33A-202ENST00000451053 MRPL54Q6P161 138 aaKnown RBP9.28□□□□□ -0.92
VPS33A-202ENST00000451053 FAM210BQ96KR6 192 aa9.28□□□□□ -0.92
VPS33A-202ENST00000451053 STAB2Q8WWQ8 2551 aa9.27□□□□□ -0.92
VPS33A-202ENST00000451053 IGHV4-4A0A075B6R2 117 aa9.27□□□□□ -0.93
VPS33A-202ENST00000451053 TEX48A0A1B0GUV7 120 aa9.27□□□□□ -0.93
VPS33A-202ENST00000451053 SPINK4O60575 86 aa9.27□□□□□ -0.93
VPS33A-202ENST00000451053 DEFB130BP0DP73 79 aa9.27□□□□□ -0.93
VPS33A-202ENST00000451053 DEFB130AP0DP74 79 aa9.27□□□□□ -0.93
VPS33A-202ENST00000451053 DAZ2Q13117 558 aaKnown RBP9.27□□□□□ -0.93
VPS33A-202ENST00000451053 SMIM15Q7Z3B0 74 aa9.27□□□□□ -0.93
VPS33A-202ENST00000451053 OR10AG1Q8NH19 301 aa9.27□□□□□ -0.93
VPS33A-202ENST00000451053 MUC7Q8TAX7 377 aa9.27□□□□□ -0.93
VPS33A-202ENST00000451053 PTH2Q96A98 100 aa9.27□□□□□ -0.93
VPS33A-202ENST00000451053 NDUFAF3Q9BU61 184 aa9.27□□□□□ -0.93
VPS33A-202ENST00000451053 A0A1B0GXF2 115 aa9.26□□□□□ -0.93
VPS33A-202ENST00000451053 COLCA2A8K830 154 aa9.26□□□□□ -0.93
VPS33A-202ENST00000451053 M0R2P5 195 aa9.26□□□□□ -0.93
VPS33A-202ENST00000451053 NXPH4O95158 308 aa9.26□□□□□ -0.93
VPS33A-202ENST00000451053 MT-ND6P03923 174 aa9.26□□□□□ -0.93
VPS33A-202ENST00000451053 TRGC1P0CF51 173 aa9.26□□□□□ -0.93
VPS33A-202ENST00000451053 DAD1P61803 113 aa9.26□□□□□ -0.93
VPS33A-202ENST00000451053 TWIST1Q15672 202 aa9.26□□□□□ -0.93
VPS33A-202ENST00000451053 PIK3CD-AS1Q5SR53 167 aa9.26□□□□□ -0.93
VPS33A-202ENST00000451053 Q6ZTC4 211 aa9.26□□□□□ -0.93
VPS33A-202ENST00000451053 Q6ZTI0 123 aa9.26□□□□□ -0.93
VPS33A-202ENST00000451053 LINC00612Q8N6U2 182 aa9.26□□□□□ -0.93
VPS33A-202ENST00000451053 MRPL16Q9NX20 251 aaKnown RBP9.26□□□□□ -0.93
VPS33A-202ENST00000451053 MUC4Q99102 2169 aa9.25□□□□□ -0.93
VPS33A-202ENST00000451053 TRGV1A0A0A0MS02 117 aa9.25□□□□□ -0.93
VPS33A-202ENST00000451053 GAGE12BA1L429 117 aa9.25□□□□□ -0.93
VPS33A-202ENST00000451053 M0R381 172 aa9.25□□□□□ -0.93
VPS33A-202ENST00000451053 GAGE7O76087 117 aa9.25□□□□□ -0.93
VPS33A-202ENST00000451053 GAGE12FP0CL80 117 aa9.25□□□□□ -0.93
VPS33A-202ENST00000451053 GAGE12GP0CL81 117 aa9.25□□□□□ -0.93
VPS33A-202ENST00000451053 GAGE12IP0CL82 117 aa9.25□□□□□ -0.93
VPS33A-202ENST00000451053 RAB5AP20339 215 aa9.25□□□□□ -0.93
VPS33A-202ENST00000451053 NTF3P20783 257 aa9.25□□□□□ -0.93
VPS33A-202ENST00000451053 ZFAND6Q6FIF0 208 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms