RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 NPBQ8NG41 125 aa6.94□□□□□ -1.3
COPB1-202ENST00000439561 SPATA25Q9BR10 227 aa6.94□□□□□ -1.3
COPB1-202ENST00000439561 CSPG4Q6UVK1 2322 aa6.94□□□□□ -1.3
COPB1-202ENST00000439561 C2CD3Q4AC94 2353 aa6.94□□□□□ -1.3
COPB1-202ENST00000439561 TRBV7-3A0A075B6L6 115 aa6.94□□□□□ -1.3
COPB1-202ENST00000439561 TRBV20-1A0A075B6N2 111 aa6.94□□□□□ -1.3
COPB1-202ENST00000439561 C11orf86A6NJI1 115 aa6.94□□□□□ -1.3
COPB1-202ENST00000439561 OR11H6Q8NGC7 330 aa6.94□□□□□ -1.3
COPB1-202ENST00000439561 RNF183Q96D59 192 aa6.94□□□□□ -1.3
COPB1-202ENST00000439561 LY6LH3BQJ8 138 aa6.93□□□□□ -1.3
COPB1-202ENST00000439561 ADARB2-AS1A8MUL3 147 aa6.93□□□□□ -1.3
COPB1-202ENST00000439561 B5MCH6 92 aa6.93□□□□□ -1.3
COPB1-202ENST00000439561 XGP55808 180 aa6.93□□□□□ -1.3
COPB1-202ENST00000439561 FOXC1Q12948 553 aa6.93□□□□□ -1.3
COPB1-202ENST00000439561 MORN3Q6PF18 240 aaPredicted RBP6.93□□□□□ -1.3
COPB1-202ENST00000439561 Q6ZUT4 128 aa6.93□□□□□ -1.3
COPB1-202ENST00000439561 JPT2Q9H910 190 aa6.93□□□□□ -1.3
COPB1-202ENST00000439561 IGHV7-4-1A0A0J9YVY3 117 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 TCL1BO95988 128 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 GAGE2BQ13066 116 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 GAGE2EQ4V326 116 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 ANKRD29Q8N6D5 301 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 PIFOQ8TCI5 191 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 RASL10AQ92737 203 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 GAGE2DQ9UEU5 116 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 ERG28Q9UKR5 140 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 IGF2RP11717 2491 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 SAA4P35542 130 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 PRR9Q5T870 116 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 PTPRQQ9UMZ3 2332 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 ZZEF1O43149 2961 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 LAMA5O15230 3695 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 IGLV2-18A0A075B6J9 118 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 TRAV12-3A0A0B4J271 114 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 ZNF688P0C7X2 276 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 NFE4Q86UQ8 179 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 TEN1Q86WV5 123 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 FAM110DQ8TAY7 271 aaPredicted RBP6.92□□□□□ -1.3
COPB1-202ENST00000439561 TOMM6Q96B49 74 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 NACAE9PAV3 2078 aa6.92□□□□□ -1.3
COPB1-202ENST00000439561 SLC25A20O43772 301 aa6.91□□□□□ -1.3
COPB1-202ENST00000439561 TCF15Q12870 199 aa6.91□□□□□ -1.3
COPB1-202ENST00000439561 CFAP126Q5VTH2 177 aa6.91□□□□□ -1.3
COPB1-202ENST00000439561 TRPT1Q86TN4 253 aaKnown RBP6.91□□□□□ -1.3
COPB1-202ENST00000439561 Q8N9W7 124 aa6.91□□□□□ -1.3
COPB1-202ENST00000439561 CNFNQ9BYD5 112 aa6.91□□□□□ -1.3
COPB1-202ENST00000439561 PRO1854Q9UHT4 67 aa6.91□□□□□ -1.3
COPB1-202ENST00000439561 TRAV12-1A0A0B4J245 112 aa6.91□□□□□ -1.3
COPB1-202ENST00000439561 PRSS47A8MTI9 375 aa6.91□□□□□ -1.3
COPB1-202ENST00000439561 M0R1W7 72 aa6.91□□□□□ -1.3
COPB1-202ENST00000439561 PMVKQ15126 192 aa6.91□□□□□ -1.3
COPB1-202ENST00000439561 C9orf139Q6ZV77 190 aa6.91□□□□□ -1.3
COPB1-202ENST00000439561 NEXN-AS1Q8NBZ9 246 aa6.91□□□□□ -1.3
COPB1-202ENST00000439561 NTN5Q8WTR8 489 aaPredicted RBP6.91□□□□□ -1.3
COPB1-202ENST00000439561 OPRPNQ99935 248 aaPredicted RBP6.91□□□□□ -1.3
COPB1-202ENST00000439561 LINC00477Q96M19 166 aa6.91□□□□□ -1.3
COPB1-202ENST00000439561 IGHV3-73A0A0B4J1V6 119 aa6.9□□□□□ -1.3
COPB1-202ENST00000439561 A4D1N5 150 aa6.9□□□□□ -1.3
COPB1-202ENST00000439561 RBAKDNA6NC62 111 aa6.9□□□□□ -1.3
COPB1-202ENST00000439561 SDHAF1A6NFY7 115 aa6.9□□□□□ -1.3
COPB1-202ENST00000439561 TCTEX1D4Q5JR98 221 aa6.9□□□□□ -1.3
COPB1-202ENST00000439561 PAPPA-AS1Q5QFB9 102 aa6.9□□□□□ -1.3
COPB1-202ENST00000439561 BRD3OSQ6XYD6 125 aa6.9□□□□□ -1.3
COPB1-202ENST00000439561 Q6ZS46 218 aa6.9□□□□□ -1.3
COPB1-202ENST00000439561 PIP4P1Q86T03 277 aa6.9□□□□□ -1.3
COPB1-202ENST00000439561 NDUFA11Q86Y39 141 aa6.9□□□□□ -1.3
COPB1-202ENST00000439561 CCDC140Q96MF4 163 aa6.9□□□□□ -1.3
COPB1-202ENST00000439561 ZNF48Q96MX3 618 aaPredicted RBP6.9□□□□□ -1.3
COPB1-202ENST00000439561 TMEM262E9PQX1 116 aa6.9□□□□□ -1.31
COPB1-202ENST00000439561 J3QQQ9 107 aa6.9□□□□□ -1.31
COPB1-202ENST00000439561 PPP1R17O96001 155 aa6.9□□□□□ -1.31
COPB1-202ENST00000439561 MSRB2Q9Y3D2 182 aa6.9□□□□□ -1.31
COPB1-202ENST00000439561 DMXL1Q9Y485 3027 aa6.89□□□□□ -1.31
COPB1-202ENST00000439561 TRAV41A0A0B4J266 112 aa6.89□□□□□ -1.31
COPB1-202ENST00000439561 A0A0U1RRA0 63 aa6.89□□□□□ -1.31
COPB1-202ENST00000439561 SPXQ9BT56 116 aa6.89□□□□□ -1.31
COPB1-202ENST00000439561 ZFAND3Q9H8U3 227 aa6.89□□□□□ -1.31
COPB1-202ENST00000439561 C20orf173Q96LM9 149 aa6.89□□□□□ -1.31
COPB1-202ENST00000439561 PRO0461Q9UI25 63 aa6.89□□□□□ -1.31
COPB1-202ENST00000439561 TRAV12-2A0A075B6T6 113 aa6.89□□□□□ -1.31
COPB1-202ENST00000439561 VCYO14598 125 aa6.89□□□□□ -1.31
COPB1-202ENST00000439561 ZFP36P26651 326 aaKnown RBP6.89□□□□□ -1.31
COPB1-202ENST00000439561 SRSF2Q01130 221 aaKnown RBP6.89□□□□□ -1.31
COPB1-202ENST00000439561 RNASE13Q5GAN3 156 aaKnown RBP6.89□□□□□ -1.31
COPB1-202ENST00000439561 UNQ9165/PRO28630Q6UXU0 137 aa6.89□□□□□ -1.31
COPB1-202ENST00000439561 C10orf126Q8N4M7 172 aa6.89□□□□□ -1.31
COPB1-202ENST00000439561 VCX2Q9H322 139 aa6.89□□□□□ -1.31
COPB1-202ENST00000439561 TRBV7-1A0A0A6YYK4 115 aa6.88□□□□□ -1.31
COPB1-202ENST00000439561 OVOL1O14753 267 aa6.88□□□□□ -1.31
COPB1-202ENST00000439561 TRBV12-3P01733 135 aa6.88□□□□□ -1.31
COPB1-202ENST00000439561 GATA3P23771 443 aa6.88□□□□□ -1.31
COPB1-202ENST00000439561 SMCPP49901 116 aaPredicted RBP6.88□□□□□ -1.31
COPB1-202ENST00000439561 MINOS1Q5TGZ0 78 aa6.88□□□□□ -1.31
COPB1-202ENST00000439561 MINOS1-NBL1R4GNA1 71 aa6.88□□□□□ -1.31
COPB1-202ENST00000439561 CSMD1Q96PZ7 3565 aa6.88□□□□□ -1.31
COPB1-202ENST00000439561 TRAV8-4A0A0B4J246 113 aa6.88□□□□□ -1.31
COPB1-202ENST00000439561 A0A0J9YY99 117 aa6.88□□□□□ -1.31
COPB1-202ENST00000439561 C9orf47Q6ZRZ4 202 aa6.88□□□□□ -1.31
COPB1-202ENST00000439561 PRO3102Q9H379 93 aa6.88□□□□□ -1.31
COPB1-202ENST00000439561 CDIP1Q9H305 208 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 125.6 ms