RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 KAAG1Q9UBP8 84 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 TMEM213A2RRL7 107 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 ZC2HC1AQ96GY0 325 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 OTOGLQ3ZCN5 2332 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 LGALS9BQ3B8N2 356 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 LINC01620Q4KN68 170 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 LGALS9CQ6DKI2 356 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 C20orf144Q9BQM9 153 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 RAI1Q7Z5J4 1906 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-204ENST00000423058 C9orf118A6NHY6 69 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 CXCL1P09341 107 aa5.43□□□□□ -1.54
SCN1A-204ENST00000423058 SRSF3P84103 164 aaKnown RBP5.43□□□□□ -1.54
SCN1A-204ENST00000423058 BAALC-AS2P0C853 105 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 IGHV4-4A0A075B6R2 117 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 TRAV4A0A0B4J268 109 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 IGHV4-59P01825 116 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 SPATA25Q9BR10 227 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 TRAV26-2A0A0B4J265 109 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 K7EM74 188 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 SIVA1O15304 175 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 RNF138Q8WVD3 245 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 NAA38Q9BRA0 125 aaKnown RBP5.42□□□□□ -1.54
SCN1A-204ENST00000423058 A8MWP6 167 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 IGHV3-30P01768 117 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 IGHV3-33P01772 117 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 IGHV3-30-3P0DP02 117 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 IGHV3-30-5P0DP03 117 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 AMTNQ6UX39 209 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 COX7B2Q8TF08 81 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 Q9H8V8 135 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 SMIM27A0A1W2PRY6 76 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 DLEU1O43261 78 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 HIST2H2BCQ6DN03 193 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 FOXL2NBQ6ZUU3 175 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 SMIM20Q8N5G0 67 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 FAM208BQ5VWN6 2430 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 TRBV7-3A0A075B6L6 115 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 H0Y9J4 135 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 BTCP35070 178 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 C17orf58Q2M2W7 97 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 ZFP2Q6ZN57 461 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 DYNAPQ8N1N2 210 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 C4orf3Q8WVX3 66 aa5.42□□□□□ -1.54
SCN1A-204ENST00000423058 IGHV4-28A0A0C4DH34 117 aa5.41□□□□□ -1.54
SCN1A-204ENST00000423058 IGFBPL1Q8WX77 278 aa5.41□□□□□ -1.54
SCN1A-204ENST00000423058 CSPG4Q6UVK1 2322 aa5.41□□□□□ -1.54
SCN1A-204ENST00000423058 LOXP28300 417 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-204ENST00000423058 IGLV3-9A0A075B6K5 115 aa5.41□□□□□ -1.54
SCN1A-204ENST00000423058 MYCNOSP40205 109 aa5.41□□□□□ -1.54
SCN1A-204ENST00000423058 PRSS57Q6UWY2 283 aa5.41□□□□□ -1.54
SCN1A-204ENST00000423058 LINC00479Q96M42 142 aa5.41□□□□□ -1.54
SCN1A-204ENST00000423058 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-204ENST00000423058 IGKV2-29A2NJV5 120 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-204ENST00000423058 IGKV4-1P06312 121 aa5.4□□□□□ -1.54
SCN1A-204ENST00000423058 SLURP1P55000 103 aa5.4□□□□□ -1.54
SCN1A-204ENST00000423058 FAM231DQ6ZW35 169 aa5.4□□□□□ -1.54
SCN1A-204ENST00000423058 C5orf38Q86SI9 138 aa5.4□□□□□ -1.54
SCN1A-204ENST00000423058 C7orf33Q8WU49 177 aa5.4□□□□□ -1.54
SCN1A-204ENST00000423058 CRYBA4P53673 196 aa5.4□□□□□ -1.54
SCN1A-204ENST00000423058 IGLV1-44P01699 117 aa5.4□□□□□ -1.55
SCN1A-204ENST00000423058 COX8AP10176 69 aa5.4□□□□□ -1.55
SCN1A-204ENST00000423058 MLANAQ16655 118 aa5.4□□□□□ -1.55
SCN1A-204ENST00000423058 DEFB136Q30KP8 78 aa5.4□□□□□ -1.55
SCN1A-204ENST00000423058 TMEM256-PLSCR3K7ERE1 68 aa5.4□□□□□ -1.55
SCN1A-204ENST00000423058 SPRY2O43597 315 aa5.4□□□□□ -1.55
SCN1A-204ENST00000423058 RNASE13Q5GAN3 156 aaKnown RBP5.4□□□□□ -1.55
SCN1A-204ENST00000423058 HIVEP2P31629 2446 aa5.4□□□□□ -1.55
SCN1A-204ENST00000423058 HILS1P60008 231 aa5.4□□□□□ -1.55
SCN1A-204ENST00000423058 PLA2G2CQ5R387 149 aa5.4□□□□□ -1.55
SCN1A-204ENST00000423058 IGLV10-54A0A075B6I4 117 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 PDE6GP18545 87 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 C11orf45Q8TAV5 145 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 DIRC1Q969H9 104 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 SND1-IT1Q9HBX3 110 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 APRG1Q8IVJ8 170 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 JMJD7-PLA2G4BH0Y9G9 81 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 QRFPP83859 136 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 MRPL35Q9NZE8 188 aaKnown RBP5.39□□□□□ -1.55
SCN1A-204ENST00000423058 PTPRSQ13332 1948 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 C18orf32Q8TCD1 76 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 ZNRD1Q9P1U0 126 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 LINC00205P59089 165 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 PYY3Q5JQD4 70 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 DEFB125Q8N687 156 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 GTSF1Q8WW33 167 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 MUC6Q6W4X9 2439 aa5.39□□□□□ -1.55
SCN1A-204ENST00000423058 COLCA2A8K830 154 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 UBE2D1P51668 147 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 ATRAIDQ6UW56 229 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 C11orf52Q96A22 123 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 TMEM89A2RUT3 159 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 IGHV2-70P01814 119 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 PIP4P1Q86T03 277 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 MUSTN1Q8IVN3 82 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 PRR15LQ9BU68 103 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 RS1O15537 224 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 NPBQ8NG41 125 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 A0A1W2PPM0 123 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 GNRH2O43555 120 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 PRR20EP86478 221 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms