RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 SNAI2O43623 268 aa14.67□□□□□ -0.06
VSX1-203ENST00000409285 S100A4P26447 101 aaKnown RBP14.67□□□□□ -0.06
VSX1-203ENST00000409285 A0A087WWC5 75 aa14.66□□□□□ -0.06
VSX1-203ENST00000409285 H3BVH4 76 aa14.66□□□□□ -0.06
VSX1-203ENST00000409285 FOXA3P55318 350 aaPredicted RBP14.66□□□□□ -0.06
VSX1-203ENST00000409285 PTH2Q96A98 100 aa14.66□□□□□ -0.06
VSX1-203ENST00000409285 CTDSP1Q9GZU7 261 aa14.66□□□□□ -0.06
VSX1-203ENST00000409285 TEX48A0A1B0GUV7 120 aa14.65□□□□□ -0.06
VSX1-203ENST00000409285 LYRM9A8MSI8 78 aa14.65□□□□□ -0.06
VSX1-203ENST00000409285 ARMS2P0C7Q2 107 aa14.65□□□□□ -0.06
VSX1-203ENST00000409285 GZMBP10144 247 aa14.65□□□□□ -0.06
VSX1-203ENST00000409285 CTRLP40313 264 aa14.65□□□□□ -0.06
VSX1-203ENST00000409285 LGALS9BQ3B8N2 356 aa14.65□□□□□ -0.06
VSX1-203ENST00000409285 GTSF1Q8WW33 167 aa14.65□□□□□ -0.06
VSX1-203ENST00000409285 NDUFAF3Q9BU61 184 aa14.65□□□□□ -0.06
VSX1-203ENST00000409285 TMEM242Q9NWH2 141 aa14.65□□□□□ -0.06
VSX1-203ENST00000409285 SPINK4O60575 86 aa14.64□□□□□ -0.07
VSX1-203ENST00000409285 SCO1O75880 301 aa14.64□□□□□ -0.07
VSX1-203ENST00000409285 PIK3CD-AS1Q5SR53 167 aa14.64□□□□□ -0.07
VSX1-203ENST00000409285 FER1L6-AS1Q8NA97 138 aa14.64□□□□□ -0.07
VSX1-203ENST00000409285 CNFNQ9BYD5 112 aa14.64□□□□□ -0.07
VSX1-203ENST00000409285 SMIM27A0A1W2PRY6 76 aa14.63□□□□□ -0.07
VSX1-203ENST00000409285 F2Z2F3 143 aa14.63□□□□□ -0.07
VSX1-203ENST00000409285 LINC00612Q8N6U2 182 aa14.63□□□□□ -0.07
VSX1-203ENST00000409285 DKK2Q9UBU2 259 aa14.63□□□□□ -0.07
VSX1-203ENST00000409285 A0A0J9YWU9 116 aa14.63□□□□□ -0.07
VSX1-203ENST00000409285 M0R2P5 195 aa14.63□□□□□ -0.07
VSX1-203ENST00000409285 DEFB4AO15263 64 aa14.63□□□□□ -0.07
VSX1-203ENST00000409285 NXPH4O95158 308 aa14.63□□□□□ -0.07
VSX1-203ENST00000409285 RASL10AQ92737 203 aa14.63□□□□□ -0.07
VSX1-203ENST00000409285 NOP10Q9NPE3 64 aaKnown RBP14.63□□□□□ -0.07
VSX1-203ENST00000409285 U3KQK5 164 aa14.63□□□□□ -0.07
VSX1-203ENST00000409285 EMP1P54849 157 aa14.62□□□□□ -0.07
VSX1-203ENST00000409285 FAM222AQ5U5X8 452 aa14.62□□□□□ -0.07
VSX1-203ENST00000409285 IMMP2LQ96T52 175 aa14.62□□□□□ -0.07
VSX1-203ENST00000409285 PHLDA3Q9Y5J5 127 aa14.62□□□□□ -0.07
VSX1-203ENST00000409285 HIGD1CA8MV81 97 aa14.61□□□□□ -0.07
VSX1-203ENST00000409285 SPART-AS1P0CW21 52 aa14.61□□□□□ -0.07
VSX1-203ENST00000409285 WDR73Q6P4I2 378 aa14.61□□□□□ -0.07
VSX1-203ENST00000409285 C18orf15Q96N68 181 aa14.61□□□□□ -0.07
VSX1-203ENST00000409285 NAT8BQ9UHF3 227 aa14.61□□□□□ -0.07
VSX1-203ENST00000409285 IGHV4-4A0A075B6R2 117 aa14.6□□□□□ -0.07
VSX1-203ENST00000409285 TMEM88Q6PEY1 159 aa14.6□□□□□ -0.07
VSX1-203ENST00000409285 ZFP82Q8N141 532 aa14.6□□□□□ -0.07
VSX1-203ENST00000409285 CACNG7P62955 275 aa14.59□□□□□ -0.07
VSX1-203ENST00000409285 ZNF876PQ49A33 203 aa14.59□□□□□ -0.07
VSX1-203ENST00000409285 LYZL1Q6UWQ5 148 aa14.59□□□□□ -0.07
VSX1-203ENST00000409285 CBLN2Q8IUK8 224 aa14.59□□□□□ -0.07
VSX1-203ENST00000409285 OR10AG1Q8NH19 301 aa14.59□□□□□ -0.07
VSX1-203ENST00000409285 EDA2RQ9HAV5 297 aa14.59□□□□□ -0.07
VSX1-203ENST00000409285 CELA1Q9UNI1 258 aa14.59□□□□□ -0.07
VSX1-203ENST00000409285 Q6ZTI0 123 aa14.58□□□□□ -0.08
VSX1-203ENST00000409285 SYT8Q8NBV8 401 aa14.58□□□□□ -0.08
VSX1-203ENST00000409285 NUP35Q8NFH5 326 aa14.58□□□□□ -0.08
VSX1-203ENST00000409285 SMCO4Q9NRQ5 59 aa14.58□□□□□ -0.08
VSX1-203ENST00000409285 DNAH7Q8WXX0 4024 aa14.58□□□□□ -0.08
VSX1-203ENST00000409285 TRGV1A0A0A0MS02 117 aa14.57□□□□□ -0.08
VSX1-203ENST00000409285 TPPP3Q9BW30 176 aa14.57□□□□□ -0.08
VSX1-203ENST00000409285 DMRTA1Q5VZB9 504 aa14.57□□□□□ -0.08
VSX1-203ENST00000409285 MRPL16Q9NX20 251 aaKnown RBP14.57□□□□□ -0.08
VSX1-203ENST00000409285 CXorf65A6NEN9 183 aa14.56□□□□□ -0.08
VSX1-203ENST00000409285 SPANXN1Q5VSR9 72 aa14.56□□□□□ -0.08
VSX1-203ENST00000409285 PGLYRP4Q96LB8 373 aa14.56□□□□□ -0.08
VSX1-203ENST00000409285 A0A1B0GUT8 65 aa14.55□□□□□ -0.08
VSX1-203ENST00000409285 M0R381 172 aa14.55□□□□□ -0.08
VSX1-203ENST00000409285 BORCS7Q96B45 105 aa14.55□□□□□ -0.08
VSX1-203ENST00000409285 URGCP-MRPS24S4R325 110 aa14.55□□□□□ -0.08
VSX1-203ENST00000409285 TRAV9-1A0A075B6T8 112 aa14.54□□□□□ -0.08
VSX1-203ENST00000409285 A8MWV9 139 aa14.54□□□□□ -0.08
VSX1-203ENST00000409285 KCNIP4Q6PIL6 250 aa14.54□□□□□ -0.08
VSX1-203ENST00000409285 C11orf45Q8TAV5 145 aa14.54□□□□□ -0.08
VSX1-203ENST00000409285 GAGE12BA1L429 117 aa14.53□□□□□ -0.08
VSX1-203ENST00000409285 GAGE7O76087 117 aa14.53□□□□□ -0.08
VSX1-203ENST00000409285 GAGE12FP0CL80 117 aa14.53□□□□□ -0.08
VSX1-203ENST00000409285 GAGE12GP0CL81 117 aa14.53□□□□□ -0.08
VSX1-203ENST00000409285 GAGE12IP0CL82 117 aa14.53□□□□□ -0.08
VSX1-203ENST00000409285 S100PP25815 95 aa14.53□□□□□ -0.08
VSX1-203ENST00000409285 DAD1P61803 113 aa14.53□□□□□ -0.08
VSX1-203ENST00000409285 C12orf74Q32Q52 190 aa14.53□□□□□ -0.08
VSX1-203ENST00000409285 TRAV4A0A0B4J268 109 aa14.52□□□□□ -0.08
VSX1-203ENST00000409285 DEFB130BP0DP73 79 aa14.52□□□□□ -0.08
VSX1-203ENST00000409285 DEFB130AP0DP74 79 aa14.52□□□□□ -0.08
VSX1-203ENST00000409285 NTF3P20783 257 aa14.52□□□□□ -0.08
VSX1-203ENST00000409285 ATP5L2Q7Z4Y8 100 aa14.52□□□□□ -0.08
VSX1-203ENST00000409285 TRGV2A0A075B6R0 118 aa14.51□□□□□ -0.09
VSX1-203ENST00000409285 MUC21A0A0G2JKD1 596 aa14.51□□□□□ -0.09
VSX1-203ENST00000409285 MUC21A0A140T8X8 626 aa14.51□□□□□ -0.09
VSX1-203ENST00000409285 CIDEAO60543 219 aa14.51□□□□□ -0.09
VSX1-203ENST00000409285 AP1S3Q96PC3 154 aa14.51□□□□□ -0.09
VSX1-203ENST00000409285 CSMD3Q7Z407 3707 aa14.51□□□□□ -0.09
VSX1-203ENST00000409285 A0A1B0GW15 77 aa14.5□□□□□ -0.09
VSX1-203ENST00000409285 RS1O15537 224 aa14.5□□□□□ -0.09
VSX1-203ENST00000409285 TRGC1P0CF51 173 aa14.5□□□□□ -0.09
VSX1-203ENST00000409285 FAM3BP58499 235 aaPredicted RBP14.5□□□□□ -0.09
VSX1-203ENST00000409285 RIGQ13278 110 aa14.5□□□□□ -0.09
VSX1-203ENST00000409285 CFAP126Q5VTH2 177 aa14.5□□□□□ -0.09
VSX1-203ENST00000409285 POM121L12Q8N7R1 296 aa14.5□□□□□ -0.09
VSX1-203ENST00000409285 BTF3L4Q96K17 158 aa14.5□□□□□ -0.09
VSX1-203ENST00000409285 TWIST1Q15672 202 aa14.5□□□□□ -0.09
VSX1-203ENST00000409285 ZFP2Q6ZN57 461 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms