RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 DUX5Q96PT3 197 aa9.36□□□□□ -0.91
HMGB1-206ENST00000405805 PPDPFQ9H3Y8 114 aa9.36□□□□□ -0.91
HMGB1-206ENST00000405805 TRAV13-1A0A0B4J241 112 aa9.36□□□□□ -0.91
HMGB1-206ENST00000405805 HAX1O00165 279 aa9.36□□□□□ -0.91
HMGB1-206ENST00000405805 EFNA4P52798 201 aa9.35□□□□□ -0.91
HMGB1-206ENST00000405805 IL17RELQ6ZVW7 336 aa9.35□□□□□ -0.91
HMGB1-206ENST00000405805 TMEM126AQ9H061 195 aa9.35□□□□□ -0.91
HMGB1-206ENST00000405805 F5H768 121 aa9.35□□□□□ -0.91
HMGB1-206ENST00000405805 PRR25Q96S07 402 aa9.35□□□□□ -0.91
HMGB1-206ENST00000405805 MYMXA0A1B0GTQ4 84 aa9.34□□□□□ -0.91
HMGB1-206ENST00000405805 TACC2O95359 2948 aa9.34□□□□□ -0.91
HMGB1-206ENST00000405805 TRGV3P03979 118 aa9.34□□□□□ -0.91
HMGB1-206ENST00000405805 DEFB1P60022 68 aa9.34□□□□□ -0.91
HMGB1-206ENST00000405805 SMPXQ9UHP9 88 aa9.34□□□□□ -0.91
HMGB1-206ENST00000405805 HIVEP3Q5T1R4 2406 aa9.34□□□□□ -0.91
HMGB1-206ENST00000405805 K7EIM0 57 aa9.34□□□□□ -0.91
HMGB1-206ENST00000405805 NPFFO15130 113 aa9.34□□□□□ -0.91
HMGB1-206ENST00000405805 RNASE4P34096 147 aaKnown RBP9.34□□□□□ -0.91
HMGB1-206ENST00000405805 CT83Q5H943 113 aa9.34□□□□□ -0.91
HMGB1-206ENST00000405805 SIGLEC15Q6ZMC9 328 aa9.34□□□□□ -0.91
HMGB1-206ENST00000405805 VMO1Q7Z5L0 202 aa9.34□□□□□ -0.91
HMGB1-206ENST00000405805 GFRA4Q9GZZ7 299 aa9.34□□□□□ -0.91
HMGB1-206ENST00000405805 A0A1B0GXF2 115 aa9.34□□□□□ -0.91
HMGB1-206ENST00000405805 TRAV41A0A0B4J266 112 aa9.33□□□□□ -0.92
HMGB1-206ENST00000405805 BRD3OSQ6XYD6 125 aa9.33□□□□□ -0.92
HMGB1-206ENST00000405805 C14orf178Q8N769 122 aaPredicted RBP9.33□□□□□ -0.92
HMGB1-206ENST00000405805 URB1-AS1Q96HZ7 61 aa9.33□□□□□ -0.92
HMGB1-206ENST00000405805 SRSF1Q07955 248 aaKnown RBP eCLIP9.33□□□□□ -0.926e-14■■□□□ 12.8
HMGB1-206ENST00000405805 ZFP2Q6ZN57 461 aa9.33□□□□□ -0.92
HMGB1-206ENST00000405805 M0R2P5 195 aa9.33□□□□□ -0.92
HMGB1-206ENST00000405805 PRB1P04280 392 aa9.33□□□□□ -0.92
HMGB1-206ENST00000405805 A4D1N5 150 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 C19orf71A6NCJ1 209 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 DUX3Q96PT4 197 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 MLST8Q9BVC4 326 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 ZFHX4Q86UP3 3567 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 TEX22C9J3V5 150 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 H3BRN7 92 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 I3L2K1 104 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 PRADC1Q9BSG0 188 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 TRAV4A0A0B4J268 109 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 TRAV21A0A0B4J279 112 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 PRAC2D3DTV9 90 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 CD7P09564 240 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 FAM110AQ9BQ89 295 aa9.32□□□□□ -0.92
HMGB1-206ENST00000405805 LAGE3Q14657 143 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 DYNAPQ8N1N2 210 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 Q8NA96 180 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 LAMA5O15230 3695 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 H7C1H1 209 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 K7ENP7 123 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 LINC00311Q8N616 119 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 SPATA25Q9BR10 227 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 CENPEQ02224 2701 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 PRO1854Q9UHT4 67 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 LOC107984640A0A0U1RRK4 108 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 SHISA9B4DS77 424 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 PLNP26678 52 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 UFSP1Q6NVU6 142 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 PRSS22Q9GZN4 317 aa9.31□□□□□ -0.92
HMGB1-206ENST00000405805 LINC00694P0DN24 101 aa9.3□□□□□ -0.92
HMGB1-206ENST00000405805 C2orf91Q6ZV80 131 aa9.3□□□□□ -0.92
HMGB1-206ENST00000405805 CRIP1P50238 77 aa9.3□□□□□ -0.92
HMGB1-206ENST00000405805 DTX2Q86UW9 622 aa9.3□□□□□ -0.92
HMGB1-206ENST00000405805 BRK1Q8WUW1 75 aa9.3□□□□□ -0.92
HMGB1-206ENST00000405805 GAS8-AS1O95177 125 aa9.29□□□□□ -0.92
HMGB1-206ENST00000405805 ASIPP42127 132 aa9.29□□□□□ -0.92
HMGB1-206ENST00000405805 ZNF80P51504 273 aaPredicted RBP9.29□□□□□ -0.92
HMGB1-206ENST00000405805 HRCT1Q6UXD1 115 aa9.29□□□□□ -0.92
HMGB1-206ENST00000405805 NAV2Q8IVL1 2488 aa9.29□□□□□ -0.92
HMGB1-206ENST00000405805 ATP6V0E1O15342 81 aa9.29□□□□□ -0.92
HMGB1-206ENST00000405805 TRPT1Q86TN4 253 aaKnown RBP9.29□□□□□ -0.92
HMGB1-206ENST00000405805 KLHL30-AS1Q8NEE0 82 aa9.29□□□□□ -0.92
HMGB1-206ENST00000405805 EEF1AKMT3Q96AZ1 226 aa9.29□□□□□ -0.92
HMGB1-206ENST00000405805 TRGV11A0A075B6L2 103 aa9.29□□□□□ -0.92
HMGB1-206ENST00000405805 NBL1P41271 181 aa9.29□□□□□ -0.92
HMGB1-206ENST00000405805 FOXE3Q13461 319 aa9.29□□□□□ -0.92
HMGB1-206ENST00000405805 SMIM9A6NGZ8 99 aa9.28□□□□□ -0.92
HMGB1-206ENST00000405805 UCNP55089 124 aa9.28□□□□□ -0.92
HMGB1-206ENST00000405805 HERVK_113P63121 156 aa9.28□□□□□ -0.92
HMGB1-206ENST00000405805 CIRBPQ14011 172 aaKnown RBP9.28□□□□□ -0.92
HMGB1-206ENST00000405805 CARD19Q96LW7 228 aa9.28□□□□□ -0.92
HMGB1-206ENST00000405805 TNRC6BQ9UPQ9 1833 aaKnown RBP9.28□□□□□ -0.92
HMGB1-206ENST00000405805 F6UB75 175 aa9.28□□□□□ -0.92
HMGB1-206ENST00000405805 IGLV1-47P01700 117 aa9.28□□□□□ -0.92
HMGB1-206ENST00000405805 GATD1Q8NB37 220 aa9.28□□□□□ -0.92
HMGB1-206ENST00000405805 LYPD1Q8N2G4 141 aa9.28□□□□□ -0.92
HMGB1-206ENST00000405805 TMEM14CQ9P0S9 112 aa9.28□□□□□ -0.92
HMGB1-206ENST00000405805 CRYGCP07315 174 aa9.27□□□□□ -0.92
HMGB1-206ENST00000405805 A0A087WWL8 130 aa9.27□□□□□ -0.93
HMGB1-206ENST00000405805 CFHR4Q92496 578 aa9.27□□□□□ -0.93
HMGB1-206ENST00000405805 SAA4P35542 130 aa9.27□□□□□ -0.93
HMGB1-206ENST00000405805 SYNJ2BPP57105 145 aa9.27□□□□□ -0.93
HMGB1-206ENST00000405805 VPREB3Q9UKI3 123 aa9.27□□□□□ -0.93
HMGB1-206ENST00000405805 E9PLD3 99 aa9.27□□□□□ -0.93
HMGB1-206ENST00000405805 PPP1R17O96001 155 aa9.27□□□□□ -0.93
HMGB1-206ENST00000405805 RBM3P98179 157 aaKnown RBP9.27□□□□□ -0.93
HMGB1-206ENST00000405805 OOSP1A8MZH6 123 aa9.26□□□□□ -0.93
HMGB1-206ENST00000405805 IGF2-ASQ6U949 168 aa9.26□□□□□ -0.93
HMGB1-206ENST00000405805 AGPAT4-IT1Q9H0P7 198 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms