RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 C1orf159Q96HA4 380 aa6.87□□□□□ -1.31
SYNE1-206ENST00000367253 CHD8Q9HCK8 2581 aa6.87□□□□□ -1.31
SYNE1-206ENST00000367253 SAA2-SAA4A0A096LPE2 208 aa6.87□□□□□ -1.31
SYNE1-206ENST00000367253 SAA2P0DJI9 122 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-206ENST00000367253 ANGP03950 147 aaKnown RBP6.86□□□□□ -1.31
SYNE1-206ENST00000367253 HLA-DMBP28068 263 aa6.86□□□□□ -1.31
SYNE1-206ENST00000367253 PTPN13Q12923 2485 aa6.86□□□□□ -1.31
SYNE1-206ENST00000367253 GTF3C1Q12789 2109 aa6.86□□□□□ -1.31
SYNE1-206ENST00000367253 ZFHX2Q9C0A1 2572 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-206ENST00000367253 DENND4CQ5VZ89 1909 aa6.86□□□□□ -1.31
SYNE1-206ENST00000367253 A0A0B4J2C4 111 aa6.86□□□□□ -1.31
SYNE1-206ENST00000367253 C5orf24Q7Z6I8 188 aa6.86□□□□□ -1.31
SYNE1-206ENST00000367253 TRAV10A0A0B4J240 114 aa6.86□□□□□ -1.31
SYNE1-206ENST00000367253 IGKV1D-13A0A0B4J2D9 117 aa6.86□□□□□ -1.31
SYNE1-206ENST00000367253 TRBV12-3P01733 135 aa6.86□□□□□ -1.31
SYNE1-206ENST00000367253 IGKV1-13P0DP09 117 aa6.86□□□□□ -1.31
SYNE1-206ENST00000367253 COX7A2LO14548 114 aa6.86□□□□□ -1.31
SYNE1-206ENST00000367253 PRR4Q16378 134 aa6.86□□□□□ -1.31
SYNE1-206ENST00000367253 LIME1Q9H400 295 aa6.86□□□□□ -1.31
SYNE1-206ENST00000367253 MYO18BQ8IUG5 2567 aa6.85□□□□□ -1.31
SYNE1-206ENST00000367253 TMEM213A2RRL7 107 aa6.85□□□□□ -1.31
SYNE1-206ENST00000367253 ZNRF2Q8NHG8 242 aa6.85□□□□□ -1.31
SYNE1-206ENST00000367253 Q8TCH9 128 aa6.85□□□□□ -1.31
SYNE1-206ENST00000367253 COL4A4P53420 1690 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-206ENST00000367253 ASPHD1Q5U4P2 390 aa6.85□□□□□ -1.31
SYNE1-206ENST00000367253 PRO3102Q9H379 93 aa6.85□□□□□ -1.31
SYNE1-206ENST00000367253 LINC01545Q5VT33 79 aa6.85□□□□□ -1.31
SYNE1-206ENST00000367253 FBXL19-AS1Q494R0 122 aa6.84□□□□□ -1.31
SYNE1-206ENST00000367253 GFRA4Q9GZZ7 299 aa6.84□□□□□ -1.31
SYNE1-206ENST00000367253 CKAP5Q14008 2032 aa6.84□□□□□ -1.31
SYNE1-206ENST00000367253 COA6Q5JTJ3 125 aaKnown RBP6.84□□□□□ -1.31
SYNE1-206ENST00000367253 ZFP2Q6ZN57 461 aa6.84□□□□□ -1.31
SYNE1-206ENST00000367253 HELZP42694 1942 aaKnown RBP6.84□□□□□ -1.31
SYNE1-206ENST00000367253 IGKV2-40A0A087WW87 121 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-206ENST00000367253 DNAJC9-AS1A6NH13 148 aa6.84□□□□□ -1.31
SYNE1-206ENST00000367253 PMS2P5A8MQ11 134 aa6.84□□□□□ -1.31
SYNE1-206ENST00000367253 C9JQL5 133 aa6.84□□□□□ -1.31
SYNE1-206ENST00000367253 IGKV2D-40P01614 121 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-206ENST00000367253 LGALS9BQ3B8N2 356 aa6.84□□□□□ -1.31
SYNE1-206ENST00000367253 LGALS9CQ6DKI2 356 aa6.84□□□□□ -1.31
SYNE1-206ENST00000367253 C16orf74Q96GX8 76 aa6.84□□□□□ -1.31
SYNE1-206ENST00000367253 C5orf63A6NC05 138 aa6.84□□□□□ -1.31
SYNE1-206ENST00000367253 SH2D1AO60880 128 aa6.84□□□□□ -1.31
SYNE1-206ENST00000367253 U3KQK5 164 aa6.84□□□□□ -1.31
SYNE1-206ENST00000367253 LINC00643Q86TS7 51 aa6.83□□□□□ -1.32
SYNE1-206ENST00000367253 ATP6V0E2Q8NHE4 81 aa6.83□□□□□ -1.32
SYNE1-206ENST00000367253 C14orf178Q8N769 122 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-206ENST00000367253 KIAA1671Q9BY89 1806 aa6.83□□□□□ -1.32
SYNE1-206ENST00000367253 RBAKDNA6NC62 111 aa6.83□□□□□ -1.32
SYNE1-206ENST00000367253 SMKR1H3BMG3 65 aa6.83□□□□□ -1.32
SYNE1-206ENST00000367253 ADORA2A-AS1P86434 159 aa6.83□□□□□ -1.32
SYNE1-206ENST00000367253 EXOC3-AS1Q8N2X6 119 aa6.83□□□□□ -1.32
SYNE1-206ENST00000367253 TMEM141Q96I45 108 aa6.83□□□□□ -1.32
SYNE1-206ENST00000367253 ATP6V0E1O15342 81 aa6.83□□□□□ -1.32
SYNE1-206ENST00000367253 GYPEP15421 78 aa6.83□□□□□ -1.32
SYNE1-206ENST00000367253 CD164Q04900 197 aa6.83□□□□□ -1.32
SYNE1-206ENST00000367253 LINC00482Q8N8I6 264 aa6.83□□□□□ -1.32
SYNE1-206ENST00000367253 UBE2D4Q9Y2X8 147 aa6.83□□□□□ -1.32
SYNE1-206ENST00000367253 TRAV23DV6A0A075B6W5 121 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 COX7CP15954 63 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 XGP55808 180 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 VSIG2Q96IQ7 327 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 IGFL2Q6UWQ7 119 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 IGFBPL1Q8WX77 278 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 MRPL36Q9P0J6 103 aaKnown RBP6.82□□□□□ -1.32
SYNE1-206ENST00000367253 IGHV1OR15-1A0A075B7D0 117 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 TRAV13-2A0A0B4J235 113 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 ETDCA0A1B0GVM5 59 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 Q6Q795 121 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 C2orf66Q6UXQ4 117 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 LYPD1Q8N2G4 141 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 ARFGEF3Q5TH69 2177 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 TMEM14EPQ6UXP3 125 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 APRG1Q8IVJ8 170 aa6.82□□□□□ -1.32
SYNE1-206ENST00000367253 H3BT86 120 aa6.81□□□□□ -1.32
SYNE1-206ENST00000367253 NDUFB1O75438 58 aa6.81□□□□□ -1.32
SYNE1-206ENST00000367253 C1orf229Q6ZS94 237 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-206ENST00000367253 GAFA1Q96PS6 74 aa6.81□□□□□ -1.32
SYNE1-206ENST00000367253 B9D2Q9BPU9 175 aa6.81□□□□□ -1.32
SYNE1-206ENST00000367253 TICRRQ7Z2Z1 1910 aa6.81□□□□□ -1.32
SYNE1-206ENST00000367253 NDUFS5O43920 106 aa6.81□□□□□ -1.32
SYNE1-206ENST00000367253 LHFPL1Q86WI0 220 aa6.81□□□□□ -1.32
SYNE1-206ENST00000367253 DEFB104AQ8WTQ1 72 aa6.81□□□□□ -1.32
SYNE1-206ENST00000367253 ZNF706Q9Y5V0 76 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-206ENST00000367253 Q8NA96 180 aa6.81□□□□□ -1.32
SYNE1-206ENST00000367253 C17orf77Q96MU5 243 aa6.81□□□□□ -1.32
SYNE1-206ENST00000367253 C14orf132Q9NPU4 83 aa6.81□□□□□ -1.32
SYNE1-206ENST00000367253 LOXP28300 417 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-206ENST00000367253 MP68P56378 58 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 PRR20EP86478 221 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 PRR20CP86479 221 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 PRR20DP86480 221 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 PRR20BP86481 221 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 PRR20AP86496 221 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 CFHR3Q02985 330 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 CLEC2BQ92478 149 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 TRGV9Q99603 122 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 SCRT2Q9NQ03 307 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 TP53TG1Q9Y2A0 90 aa6.8□□□□□ -1.32
SYNE1-206ENST00000367253 IGHV3-73A0A0B4J1V6 119 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms