RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 UBE2AP49459 152 aa12.52□□□□□ -0.41
COL18A1-203ENST00000359759 SPRNQ5BIV9 151 aa12.52□□□□□ -0.41
COL18A1-203ENST00000359759 DIDO1Q9BTC0 2240 aaKnown RBP12.51□□□□□ -0.41
COL18A1-203ENST00000359759 PROP1O75360 226 aa12.51□□□□□ -0.41
COL18A1-203ENST00000359759 CRIPAKQ8N1N5 446 aa12.51□□□□□ -0.41
COL18A1-203ENST00000359759 OPRPNQ99935 248 aaPredicted RBP12.51□□□□□ -0.41
COL18A1-203ENST00000359759 ETV2O00321 342 aaPredicted RBP12.51□□□□□ -0.41
COL18A1-203ENST00000359759 KIR2DL5BA0A0G2JN68 375 aa12.51□□□□□ -0.41
COL18A1-203ENST00000359759 KIR2DL5BA0A0G2JPC4 375 aa12.51□□□□□ -0.41
COL18A1-203ENST00000359759 KIR2DL5AQ8N109 375 aa12.51□□□□□ -0.41
COL18A1-203ENST00000359759 TNRC6BQ9UPQ9 1833 aaKnown RBP12.5□□□□□ -0.41
COL18A1-203ENST00000359759 FAM186AA6NE01 2351 aa12.5□□□□□ -0.41
COL18A1-203ENST00000359759 LGALS9O00182 355 aa12.5□□□□□ -0.41
COL18A1-203ENST00000359759 LINC01620Q4KN68 170 aa12.5□□□□□ -0.41
COL18A1-203ENST00000359759 ATP6V0E2Q8NHE4 81 aa12.5□□□□□ -0.41
COL18A1-203ENST00000359759 CRYGBP07316 175 aa12.5□□□□□ -0.41
COL18A1-203ENST00000359759 RNASE8Q8TDE3 154 aaKnown RBP12.5□□□□□ -0.41
COL18A1-203ENST00000359759 K7ENP7 123 aa12.5□□□□□ -0.41
COL18A1-203ENST00000359759 SPTSSBQ8NFR3 76 aa12.5□□□□□ -0.41
COL18A1-203ENST00000359759 WFDC11Q8NEX6 87 aa12.49□□□□□ -0.41
COL18A1-203ENST00000359759 HELZP42694 1942 aaKnown RBP12.49□□□□□ -0.41
COL18A1-203ENST00000359759 LECT2O14960 151 aa12.49□□□□□ -0.41
COL18A1-203ENST00000359759 IGHV4OR15-8A0A075B7B6 117 aa12.49□□□□□ -0.41
COL18A1-203ENST00000359759 A0A087WW49 117 aa12.49□□□□□ -0.41
COL18A1-203ENST00000359759 J3QLI3 93 aa12.49□□□□□ -0.41
COL18A1-203ENST00000359759 ELANEP08246 267 aa12.49□□□□□ -0.41
COL18A1-203ENST00000359759 MRPL36Q9P0J6 103 aaKnown RBP12.49□□□□□ -0.41
COL18A1-203ENST00000359759 PIFOQ8TCI5 191 aa12.49□□□□□ -0.41
COL18A1-203ENST00000359759 H0Y9J4 135 aa12.48□□□□□ -0.41
COL18A1-203ENST00000359759 F8W735 103 aaPredicted RBP12.48□□□□□ -0.41
COL18A1-203ENST00000359759 RSPO1Q2MKA7 263 aaPredicted RBP12.48□□□□□ -0.41
COL18A1-203ENST00000359759 MPLKIPQ8TAP9 179 aa12.48□□□□□ -0.41
COL18A1-203ENST00000359759 C16orf74Q96GX8 76 aa12.48□□□□□ -0.41
COL18A1-203ENST00000359759 H0YGX0 51 aa12.48□□□□□ -0.41
COL18A1-203ENST00000359759 DEFB4AO15263 64 aa12.47□□□□□ -0.41
COL18A1-203ENST00000359759 ZDBF2Q9HCK1 2354 aa12.47□□□□□ -0.41
COL18A1-203ENST00000359759 FOXI1Q12951 378 aa12.47□□□□□ -0.41
COL18A1-203ENST00000359759 PRSS33Q8NF86 280 aa12.46□□□□□ -0.41
COL18A1-203ENST00000359759 CTSZQ9UBR2 303 aa12.46□□□□□ -0.41
COL18A1-203ENST00000359759 TEN1Q86WV5 123 aa12.46□□□□□ -0.41
COL18A1-203ENST00000359759 TSC2P49815 1807 aa12.46□□□□□ -0.41
COL18A1-203ENST00000359759 VPREB3Q9UKI3 123 aa12.46□□□□□ -0.41
COL18A1-203ENST00000359759 LINC01545Q5VT33 79 aa12.46□□□□□ -0.42
COL18A1-203ENST00000359759 DAZ2Q13117 558 aaKnown RBP12.46□□□□□ -0.42
COL18A1-203ENST00000359759 DAZ4Q86SG3 579 aaKnown RBP12.46□□□□□ -0.42
COL18A1-203ENST00000359759 DAZ3Q9NR90 486 aaKnown RBP12.46□□□□□ -0.42
COL18A1-203ENST00000359759 TICRRQ7Z2Z1 1910 aa12.45□□□□□ -0.42
COL18A1-203ENST00000359759 SEC61GP60059 68 aa12.45□□□□□ -0.42
COL18A1-203ENST00000359759 HIGD2BQ4VC39 106 aa12.45□□□□□ -0.42
COL18A1-203ENST00000359759 IGLV1-44P01699 117 aa12.45□□□□□ -0.42
COL18A1-203ENST00000359759 PTH2Q96A98 100 aa12.45□□□□□ -0.42
COL18A1-203ENST00000359759 PLXND1Q9Y4D7 1925 aa12.45□□□□□ -0.42
COL18A1-203ENST00000359759 IGKV2D-26A0A0A0MRZ7 120 aa12.45□□□□□ -0.42
COL18A1-203ENST00000359759 IGHV4-38-2P0DP08 117 aa12.45□□□□□ -0.42
COL18A1-203ENST00000359759 AJUBAQ96IF1 538 aa12.45□□□□□ -0.42
COL18A1-203ENST00000359759 GRNP28799 593 aaKnown RBP12.44□□□□□ -0.42
COL18A1-203ENST00000359759 H3BUA1 57 aa12.44□□□□□ -0.42
COL18A1-203ENST00000359759 SBF1O95248 1867 aa12.44□□□□□ -0.42
COL18A1-203ENST00000359759 GP9P14770 177 aa12.44□□□□□ -0.42
COL18A1-203ENST00000359759 INTS1Q8N201 2190 aaKnown RBP12.44□□□□□ -0.42
COL18A1-203ENST00000359759 TAX1BP3O14907 124 aa12.44□□□□□ -0.42
COL18A1-203ENST00000359759 Q8N1Y9 231 aa12.44□□□□□ -0.42
COL18A1-203ENST00000359759 GTSF1Q8WW33 167 aa12.44□□□□□ -0.42
COL18A1-203ENST00000359759 LTBP1Q14766 1721 aa12.44□□□□□ -0.42
COL18A1-203ENST00000359759 CACNA1BQ00975 2339 aa12.43□□□□□ -0.42
COL18A1-203ENST00000359759 DOCK7Q96N67 2140 aa12.43□□□□□ -0.42
COL18A1-203ENST00000359759 TRAV23DV6A0A075B6W5 121 aa12.43□□□□□ -0.42
COL18A1-203ENST00000359759 DEFB1P60022 68 aa12.43□□□□□ -0.42
COL18A1-203ENST00000359759 PRAC2D3DTV9 90 aa12.43□□□□□ -0.42
COL18A1-203ENST00000359759 FAM110AQ9BQ89 295 aa12.43□□□□□ -0.42
COL18A1-203ENST00000359759 IGKV4-1P06312 121 aa12.42□□□□□ -0.42
COL18A1-203ENST00000359759 CCL18P55774 89 aa12.42□□□□□ -0.42
COL18A1-203ENST00000359759 TOMM6Q96B49 74 aa12.42□□□□□ -0.42
COL18A1-203ENST00000359759 POLEQ07864 2286 aa12.42□□□□□ -0.42
COL18A1-203ENST00000359759 WI2-2373I1.2A0A1W2PRP0 233 aa12.42□□□□□ -0.42
COL18A1-203ENST00000359759 TRBV10-2A0A0K0K1G8 114 aa12.42□□□□□ -0.42
COL18A1-203ENST00000359759 TM2D2Q9BX73 214 aa12.42□□□□□ -0.42
COL18A1-203ENST00000359759 HHLA3Q9XRX5 114 aa12.42□□□□□ -0.42
COL18A1-203ENST00000359759 I3L2K1 104 aa12.42□□□□□ -0.42
COL18A1-203ENST00000359759 DOCK8Q8NF50 2099 aa12.41□□□□□ -0.42
COL18A1-203ENST00000359759 WDR81Q562E7 1941 aa12.41□□□□□ -0.42
COL18A1-203ENST00000359759 EML6Q6ZMW3 1958 aa12.41□□□□□ -0.42
COL18A1-203ENST00000359759 NDUFA1O15239 70 aa12.41□□□□□ -0.42
COL18A1-203ENST00000359759 TRBV12-3P01733 135 aa12.41□□□□□ -0.42
COL18A1-203ENST00000359759 FAM215AQ9Y5M1 114 aa12.41□□□□□ -0.42
COL18A1-203ENST00000359759 SPART-AS1P0CW21 52 aa12.41□□□□□ -0.42
COL18A1-203ENST00000359759 PLXNA3P51805 1871 aa12.41□□□□□ -0.42
COL18A1-203ENST00000359759 G3V4G9 280 aa12.4□□□□□ -0.42
COL18A1-203ENST00000359759 C9orf66Q5T8R8 295 aa12.4□□□□□ -0.42
COL18A1-203ENST00000359759 MIR7-3HGQ8N6C7 128 aa12.4□□□□□ -0.42
COL18A1-203ENST00000359759 LYPD6BQ8NI32 183 aa12.4□□□□□ -0.42
COL18A1-203ENST00000359759 DIRC1Q969H9 104 aa12.4□□□□□ -0.42
COL18A1-203ENST00000359759 ATP5G1P05496 136 aa12.4□□□□□ -0.42
COL18A1-203ENST00000359759 BLCAPP62952 87 aa12.4□□□□□ -0.42
COL18A1-203ENST00000359759 NFE4Q86UQ8 179 aa12.4□□□□□ -0.42
COL18A1-203ENST00000359759 C4orf48Q5BLP8 95 aa12.4□□□□□ -0.42
COL18A1-203ENST00000359759 CHD3Q12873 2000 aaKnown RBP12.4□□□□□ -0.42
COL18A1-203ENST00000359759 CENPVL3A0A0U1RRI6 287 aa12.4□□□□□ -0.43
COL18A1-203ENST00000359759 PATE2Q6UY27 113 aa12.4□□□□□ -0.43
COL18A1-203ENST00000359759 MLST8Q9BVC4 326 aa12.4□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms