RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 RPL35AP18077 110 aaKnown RBP10.85□□□□□ -0.67
CCDC88C-202ENST00000334448 NTF3P20783 257 aa10.85□□□□□ -0.67
CCDC88C-202ENST00000334448 FABP9Q0Z7S8 132 aa10.85□□□□□ -0.67
CCDC88C-202ENST00000334448 ZNF705AQ6ZN79 300 aaPredicted RBP10.85□□□□□ -0.67
CCDC88C-202ENST00000334448 FRZBQ92765 325 aa10.85□□□□□ -0.67
CCDC88C-202ENST00000334448 CSTL1Q9H114 145 aa10.85□□□□□ -0.67
CCDC88C-202ENST00000334448 GOLT1BQ9Y3E0 138 aa10.85□□□□□ -0.67
CCDC88C-202ENST00000334448 PKD1L1Q8TDX9 2849 aa10.85□□□□□ -0.67
CCDC88C-202ENST00000334448 LOC102724200A0A096LPH7 203 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 CBY3A6NI87 242 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 HIST1H2BKO60814 126 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 APCSP02743 223 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 HIST1H2BJP06899 126 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 HIST1H2BOP23527 126 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 HIST1H2BBP33778 126 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 HIST1H2BDP58876 126 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 KRTAP10-11P60412 298 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 HIST1H2BCP62807 126 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 SLAQ13239 276 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 HIST2H2BEQ16778 126 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 ZFP82Q8N141 532 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 IL17DQ8TAD2 202 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 HIST1H2BHQ93079 126 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 LINC01587Q99440 93 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 HIST1H2BNQ99877 126 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 HIST1H2BMQ99879 126 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 NDUFAF3Q9BU61 184 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 MDFICQ9P1T7 246 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 TMA7Q9Y2S6 64 aaKnown RBP10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 PHLDA3Q9Y5J5 127 aa10.84□□□□□ -0.67
CCDC88C-202ENST00000334448 TRGC1P0CF51 173 aa10.83□□□□□ -0.68
CCDC88C-202ENST00000334448 RAB4BP61018 213 aa10.83□□□□□ -0.68
CCDC88C-202ENST00000334448 ZNF415Q09FC8 603 aa10.83□□□□□ -0.68
CCDC88C-202ENST00000334448 TWIST1Q15672 202 aa10.83□□□□□ -0.68
CCDC88C-202ENST00000334448 KRTAP21-3Q3LHN1 58 aa10.83□□□□□ -0.68
CCDC88C-202ENST00000334448 SPANXN1Q5VSR9 72 aa10.83□□□□□ -0.68
CCDC88C-202ENST00000334448 FAM104BQ5XKR9 115 aa10.83□□□□□ -0.68
CCDC88C-202ENST00000334448 C11orf72Q8NBR9 251 aa10.83□□□□□ -0.68
CCDC88C-202ENST00000334448 APOC4P55056 127 aa10.82□□□□□ -0.68
CCDC88C-202ENST00000334448 COA6Q5JTJ3 125 aaKnown RBP10.82□□□□□ -0.68
CCDC88C-202ENST00000334448 KPRPQ5T749 579 aaPredicted RBP10.82□□□□□ -0.68
CCDC88C-202ENST00000334448 SPXQ9BT56 116 aa10.82□□□□□ -0.68
CCDC88C-202ENST00000334448 MSRB1Q9NZV6 116 aa10.82□□□□□ -0.68
CCDC88C-202ENST00000334448 UBE2CO00762 179 aa10.81□□□□□ -0.68
CCDC88C-202ENST00000334448 SYT8Q8NBV8 401 aa10.81□□□□□ -0.68
CCDC88C-202ENST00000334448 RNASE8Q8TDE3 154 aaKnown RBP10.81□□□□□ -0.68
CCDC88C-202ENST00000334448 TMEM263Q8WUH6 116 aaKnown RBP10.81□□□□□ -0.68
CCDC88C-202ENST00000334448 AP1S3Q96PC3 154 aa10.81□□□□□ -0.68
CCDC88C-202ENST00000334448 TMEM208Q9BTX3 173 aa10.81□□□□□ -0.68
CCDC88C-202ENST00000334448 MUC21A0A0G2JKD1 596 aa10.8□□□□□ -0.68
CCDC88C-202ENST00000334448 MUC21A0A140T8X8 626 aa10.8□□□□□ -0.68
CCDC88C-202ENST00000334448 IGHV4-30-4P0DP06 118 aa10.8□□□□□ -0.68
CCDC88C-202ENST00000334448 SMIM15Q7Z3B0 74 aa10.8□□□□□ -0.68
CCDC88C-202ENST00000334448 POM121L12Q8N7R1 296 aa10.8□□□□□ -0.68
CCDC88C-202ENST00000334448 U3KQK5 164 aa10.8□□□□□ -0.68
CCDC88C-202ENST00000334448 G3V4G9 280 aa10.79□□□□□ -0.68
CCDC88C-202ENST00000334448 M0R381 172 aa10.79□□□□□ -0.68
CCDC88C-202ENST00000334448 RNF185Q96GF1 192 aa10.79□□□□□ -0.68
CCDC88C-202ENST00000334448 ALKBH7Q9BT30 221 aaPredicted RBP10.79□□□□□ -0.68
CCDC88C-202ENST00000334448 KIF25-AS1Q9Y6Z4 181 aa10.79□□□□□ -0.68
CCDC88C-202ENST00000334448 SMIM9A6NGZ8 99 aa10.78□□□□□ -0.68
CCDC88C-202ENST00000334448 M0R2P5 195 aa10.78□□□□□ -0.68
CCDC88C-202ENST00000334448 SPRY2O43597 315 aa10.78□□□□□ -0.68
CCDC88C-202ENST00000334448 PPBPP02775 128 aa10.78□□□□□ -0.68
CCDC88C-202ENST00000334448 Q0VG73 95 aa10.78□□□□□ -0.68
CCDC88C-202ENST00000334448 DAZ2Q13117 558 aaKnown RBP10.78□□□□□ -0.68
CCDC88C-202ENST00000334448 AMN1Q8IY45 258 aa10.78□□□□□ -0.68
CCDC88C-202ENST00000334448 C16orf74Q96GX8 76 aa10.78□□□□□ -0.68
CCDC88C-202ENST00000334448 DPH3P1Q9H4G8 78 aa10.78□□□□□ -0.68
CCDC88C-202ENST00000334448 GSN-AS1Q9NRJ2 163 aa10.78□□□□□ -0.68
CCDC88C-202ENST00000334448 TIMM8BQ9Y5J9 83 aaPredicted RBP10.78□□□□□ -0.68
CCDC88C-202ENST00000334448 MGAM2Q2M2H8 2515 aa10.77□□□□□ -0.69
CCDC88C-202ENST00000334448 RAB4AP20338 218 aa10.77□□□□□ -0.69
CCDC88C-202ENST00000334448 EVI2AP22794 236 aa10.77□□□□□ -0.69
CCDC88C-202ENST00000334448 OR10J3Q5JRS4 329 aa10.77□□□□□ -0.69
CCDC88C-202ENST00000334448 Q6ZWC4 215 aa10.77□□□□□ -0.69
CCDC88C-202ENST00000334448 RCHY1Q96PM5 261 aa10.77□□□□□ -0.69
CCDC88C-202ENST00000334448 LAMTOR2Q9Y2Q5 125 aa10.77□□□□□ -0.69
CCDC88C-202ENST00000334448 PLAC8L1A1L4L8 177 aa10.76□□□□□ -0.69
CCDC88C-202ENST00000334448 C5orf52A6NGY3 159 aa10.76□□□□□ -0.69
CCDC88C-202ENST00000334448 AZU1P20160 251 aa10.76□□□□□ -0.69
CCDC88C-202ENST00000334448 SRIP30626 198 aa10.76□□□□□ -0.69
CCDC88C-202ENST00000334448 LINC00315P59091 139 aa10.76□□□□□ -0.69
CCDC88C-202ENST00000334448 RRN3P1Q2M238 152 aa10.76□□□□□ -0.69
CCDC88C-202ENST00000334448 LGALS9BQ3B8N2 356 aa10.76□□□□□ -0.69
CCDC88C-202ENST00000334448 KIAA1644Q3SXP7 199 aa10.76□□□□□ -0.69
CCDC88C-202ENST00000334448 ZNF876PQ49A33 203 aa10.76□□□□□ -0.69
CCDC88C-202ENST00000334448 MRPL51Q4U2R6 128 aaKnown RBP10.76□□□□□ -0.69
CCDC88C-202ENST00000334448 RASL10AQ92737 203 aa10.76□□□□□ -0.69
CCDC88C-202ENST00000334448 MRAP2Q96G30 205 aa10.76□□□□□ -0.69
CCDC88C-202ENST00000334448 NBEAL1Q6ZS30 2694 aa10.76□□□□□ -0.69
CCDC88C-202ENST00000334448 S100A6P06703 90 aa10.75□□□□□ -0.69
CCDC88C-202ENST00000334448 HTN1P15515 57 aa10.75□□□□□ -0.69
CCDC88C-202ENST00000334448 ORMDL3Q8N138 153 aa10.75□□□□□ -0.69
CCDC88C-202ENST00000334448 OVOL2Q9BRP0 275 aa10.75□□□□□ -0.69
CCDC88C-202ENST00000334448 X6R8D5 127 aa10.75□□□□□ -0.69
CCDC88C-202ENST00000334448 DNHD1Q96M86 4753 aa10.75□□□□□ -0.69
CCDC88C-202ENST00000334448 MUC4Q99102 2169 aa10.75□□□□□ -0.69
CCDC88C-202ENST00000334448 IGHV3OR16-12A0A075B7B8 117 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms