RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 IGLC6P0CF74 106 aa4.3□□□□□ -1.72
PTPRB-202ENST00000334414 XCL1P47992 114 aa4.3□□□□□ -1.72
PTPRB-202ENST00000334414 SPAG17Q6Q759 2223 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 TDRG1Q3Y452 100 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 C5orf24Q7Z6I8 188 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 ZNF503Q96F45 646 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 DOCK11Q5JSL3 2073 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 COL4A5P29400 1685 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 COX17Q14061 63 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 CAMK2N2Q96S95 79 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 BPY2O14599 106 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 MSMBP08118 114 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 UBE2D2P62837 147 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 RSPO4Q2I0M5 234 aaPredicted RBP4.29□□□□□ -1.72
PTPRB-202ENST00000334414 CFAP126Q5VTH2 177 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 AGPAT4-IT1Q9H0P7 198 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 I3L2K1 104 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 DOCK3Q8IZD9 2030 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 IBA57-AS1B1ANH7 110 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 LOXP28300 417 aaPredicted RBP4.29□□□□□ -1.72
PTPRB-202ENST00000334414 IGFL4Q6B9Z1 124 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 B9D2Q9BPU9 175 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 XCL2Q9UBD3 114 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 TDRD6O60522 2096 aaKnown RBP4.29□□□□□ -1.72
PTPRB-202ENST00000334414 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.29□□□□□ -1.72
PTPRB-202ENST00000334414 IGKV2-29A2NJV5 120 aaPredicted RBP4.29□□□□□ -1.72
PTPRB-202ENST00000334414 THSD7BQ9C0I4 1608 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 A0A0G2JNJ9 132 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 C20orf203Q8NBC4 194 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 Q9UFV3 132 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 C14orf177Q52M58 125 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 C11orf1Q9H5F2 150 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 IGLV11-55A0A075B6I3 123 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 ATP1A1-AS1Q5TC04 95 aa4.29□□□□□ -1.72
PTPRB-202ENST00000334414 PINLYPA6NC86 204 aa4.28□□□□□ -1.72
PTPRB-202ENST00000334414 LHBP01229 141 aa4.28□□□□□ -1.72
PTPRB-202ENST00000334414 ARID1AO14497 2285 aa4.28□□□□□ -1.72
PTPRB-202ENST00000334414 K7EMT4 169 aa4.28□□□□□ -1.72
PTPRB-202ENST00000334414 Q0VFX4 171 aa4.28□□□□□ -1.72
PTPRB-202ENST00000334414 VPREB3Q9UKI3 123 aa4.28□□□□□ -1.72
PTPRB-202ENST00000334414 CHD3Q12873 2000 aaKnown RBP4.28□□□□□ -1.72
PTPRB-202ENST00000334414 WDR86Q86TI4 376 aa4.28□□□□□ -1.72
PTPRB-202ENST00000334414 MLST8Q9BVC4 326 aa4.28□□□□□ -1.72
PTPRB-202ENST00000334414 TMEM223A0PJW6 202 aa4.28□□□□□ -1.72
PTPRB-202ENST00000334414 RPL39LQ96EH5 51 aaKnown RBP4.28□□□□□ -1.72
PTPRB-202ENST00000334414 SMIM9A6NGZ8 99 aa4.28□□□□□ -1.72
PTPRB-202ENST00000334414 C20orf197Q8N268 126 aa4.28□□□□□ -1.72
PTPRB-202ENST00000334414 IGHV3-30-3P0DP02 117 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 NFE4Q86UQ8 179 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 YPEL4Q96NS1 127 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 PLXNB3Q9ULL4 1909 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 LYPD2Q6UXB3 125 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 TICRRQ7Z2Z1 1910 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 TMEM263Q8WUH6 116 aaKnown RBP4.27□□□□□ -1.73
PTPRB-202ENST00000334414 ZNF581Q9P0T4 197 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 UBE2E2Q96LR5 201 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 VWA8A3KMH1 1905 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 TRAV23DV6A0A075B6W5 121 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 LST1O00453 97 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 FAM167A-AS1Q96KT0 104 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 IGHV3-38A0A0C4DH36 116 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 A0A0J9YXV3 536 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 NUPR1O60356 82 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 VPREB1P12018 145 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 SDIM1Q6ZPB5 146 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 A6NED7 52 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 MPLKIPQ8TAP9 179 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 FANCMQ8IYD8 2048 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 IGHV3-16A0A0C4DH30 117 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 DHRS4-AS1Q9P1J3 65 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 PRO0628Q9UI54 55 aa4.27□□□□□ -1.73
PTPRB-202ENST00000334414 TRAV12-2A0A075B6T6 113 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 ENHOQ6UWT2 76 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 PYGO1Q9Y3Y4 419 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 RNF144BQ7Z419 303 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 DOCK9Q9BZ29 2069 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 PIK3CD-AS1Q5SR53 167 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 UFSP1Q6NVU6 142 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 CASC2Q6XLA1 102 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 LRRK1Q38SD2 2015 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 ZNF706Q9Y5V0 76 aaPredicted RBP4.26□□□□□ -1.73
PTPRB-202ENST00000334414 A0A0U1RQV1 116 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 UBE2D4Q9Y2X8 147 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 RS1O15537 224 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 DKK4Q9UBT3 224 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 PRORYQ9H606 182 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 IGHV3-30P01768 117 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 IGHV3-30-5P0DP03 117 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 MIR7-3HGQ8N6C7 128 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 C4orf3Q8WVX3 66 aa4.26□□□□□ -1.73
PTPRB-202ENST00000334414 IGKV2D-24A0A075B6R9 120 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 GNRH2O43555 120 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 IGKV4-1P06312 121 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 K7ENP7 123 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 NOP10Q9NPE3 64 aaKnown RBP4.25□□□□□ -1.73
PTPRB-202ENST00000334414 NUP210LQ5VU65 1888 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 MLANAQ16655 118 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 TRIAP1O43715 76 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 RNASE13Q5GAN3 156 aaKnown RBP4.25□□□□□ -1.73
PTPRB-202ENST00000334414 SPTBP11277 2137 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms