RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 FOXI2Q6ZQN5 318 aa11.38□□□□□ -0.59
TCOF1-201ENST00000323668 TRAV12-2A0A075B6T6 113 aa11.37□□□□□ -0.59
TCOF1-201ENST00000323668 TRAV8-4A0A0B4J246 113 aa11.37□□□□□ -0.59
TCOF1-201ENST00000323668 NPC2P61916 151 aa11.37□□□□□ -0.59
TCOF1-201ENST00000323668 TCF15Q12870 199 aa11.37□□□□□ -0.59
TCOF1-201ENST00000323668 TRGV2A0A075B6R0 118 aa11.37□□□□□ -0.59
TCOF1-201ENST00000323668 I3L3M4 83 aa11.37□□□□□ -0.59
TCOF1-201ENST00000323668 J3QQQ9 107 aa11.37□□□□□ -0.59
TCOF1-201ENST00000323668 ZFAND6Q6FIF0 208 aa11.37□□□□□ -0.59
TCOF1-201ENST00000323668 PRO1854Q9UHT4 67 aa11.37□□□□□ -0.59
TCOF1-201ENST00000323668 H3BUA1 57 aa11.37□□□□□ -0.59
TCOF1-201ENST00000323668 IGF2RP11717 2491 aa11.37□□□□□ -0.59
TCOF1-201ENST00000323668 OR13C6PQ8NH95 151 aa11.37□□□□□ -0.59
TCOF1-201ENST00000323668 PPDPFLQ8WWR9 84 aa11.37□□□□□ -0.59
TCOF1-201ENST00000323668 LY6LH3BQJ8 138 aa11.36□□□□□ -0.59
TCOF1-201ENST00000323668 COL4A2P08572 1712 aa11.36□□□□□ -0.59
TCOF1-201ENST00000323668 DEFB131AP59861 70 aa11.36□□□□□ -0.59
TCOF1-201ENST00000323668 AZU1P20160 251 aa11.36□□□□□ -0.59
TCOF1-201ENST00000323668 TSPAN13O95857 204 aa11.35□□□□□ -0.59
TCOF1-201ENST00000323668 MORN3Q6PF18 240 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-201ENST00000323668 ODF3BA8MYP8 253 aa11.35□□□□□ -0.59
TCOF1-201ENST00000323668 FSTL3O95633 263 aa11.35□□□□□ -0.59
TCOF1-201ENST00000323668 C2orf82Q6UX34 121 aa11.35□□□□□ -0.59
TCOF1-201ENST00000323668 SH2D6Q7Z4S9 175 aa11.35□□□□□ -0.59
TCOF1-201ENST00000323668 BRCA2P51587 3418 aa11.35□□□□□ -0.59
TCOF1-201ENST00000323668 KNCNA6PVL3 124 aa11.35□□□□□ -0.59
TCOF1-201ENST00000323668 URB1-AS1Q96HZ7 61 aa11.35□□□□□ -0.59
TCOF1-201ENST00000323668 TRAV12-1A0A0B4J245 112 aa11.34□□□□□ -0.59
TCOF1-201ENST00000323668 C5orf56Q8N8D9 126 aa11.34□□□□□ -0.59
TCOF1-201ENST00000323668 ADORA2A-AS1P86434 159 aa11.34□□□□□ -0.59
TCOF1-201ENST00000323668 C10orf126Q8N4M7 172 aa11.34□□□□□ -0.59
TCOF1-201ENST00000323668 A0A1W2PRX2 142 aa11.34□□□□□ -0.59
TCOF1-201ENST00000323668 GATA3P23771 443 aa11.34□□□□□ -0.59
TCOF1-201ENST00000323668 CHD9Q3L8U1 2897 aa11.34□□□□□ -0.59
TCOF1-201ENST00000323668 WFDC2Q14508 124 aa11.33□□□□□ -0.6
TCOF1-201ENST00000323668 SIRPDQ9H106 197 aa11.33□□□□□ -0.6
TCOF1-201ENST00000323668 ATRXP46100 2492 aa11.33□□□□□ -0.6
TCOF1-201ENST00000323668 MKI67P46013 3256 aaKnown RBP11.33□□□□□ -0.6
TCOF1-201ENST00000323668 ARHGAP32A7KAX9 2087 aa11.33□□□□□ -0.6
TCOF1-201ENST00000323668 RBX1P62877 108 aa11.33□□□□□ -0.6
TCOF1-201ENST00000323668 RPL36AP83881 106 aaKnown RBP11.33□□□□□ -0.6
TCOF1-201ENST00000323668 PHLDA1Q8WV24 401 aaPredicted RBP11.33□□□□□ -0.6
TCOF1-201ENST00000323668 RPL36ALQ969Q0 106 aaKnown RBP11.33□□□□□ -0.6
TCOF1-201ENST00000323668 U3KQK5 164 aa11.33□□□□□ -0.6
TCOF1-201ENST00000323668 TRBV7-9A0A0J9YWB2 115 aa11.33□□□□□ -0.6
TCOF1-201ENST00000323668 DSCAML1Q8TD84 2053 aa11.33□□□□□ -0.6
TCOF1-201ENST00000323668 KLHL30-AS1Q8NEE0 82 aa11.32□□□□□ -0.6
TCOF1-201ENST00000323668 C2CD3Q4AC94 2353 aa11.32□□□□□ -0.6
TCOF1-201ENST00000323668 ATP6V0BQ99437 205 aa11.32□□□□□ -0.6
TCOF1-201ENST00000323668 FGF6P10767 208 aa11.32□□□□□ -0.6
TCOF1-201ENST00000323668 RANBP2P49792 3224 aaKnown RBP11.32□□□□□ -0.6
TCOF1-201ENST00000323668 CEP295Q9C0D2 2601 aa11.32□□□□□ -0.6
TCOF1-201ENST00000323668 TRGV1A0A0A0MS02 117 aa11.31□□□□□ -0.6
TCOF1-201ENST00000323668 LINC01356Q8N9X3 169 aa11.31□□□□□ -0.6
TCOF1-201ENST00000323668 WNK1Q9H4A3 2382 aa11.31□□□□□ -0.6
TCOF1-201ENST00000323668 RHODO00212 210 aa11.31□□□□□ -0.6
TCOF1-201ENST00000323668 BLCAPP62952 87 aa11.31□□□□□ -0.6
TCOF1-201ENST00000323668 ADARB2-AS1A8MUL3 147 aa11.31□□□□□ -0.6
TCOF1-201ENST00000323668 G3V4G9 280 aa11.31□□□□□ -0.6
TCOF1-201ENST00000323668 TNFRSF13BO14836 293 aaPredicted RBP11.31□□□□□ -0.6
TCOF1-201ENST00000323668 C11orf44Q8N8P7 122 aa11.31□□□□□ -0.6
TCOF1-201ENST00000323668 TOMM6Q96B49 74 aa11.31□□□□□ -0.6
TCOF1-201ENST00000323668 C2orf91Q6ZV80 131 aa11.3□□□□□ -0.6
TCOF1-201ENST00000323668 AJUBAQ96IF1 538 aa11.3□□□□□ -0.6
TCOF1-201ENST00000323668 CCDC140Q96MF4 163 aa11.3□□□□□ -0.6
TCOF1-201ENST00000323668 DEFB1P60022 68 aa11.3□□□□□ -0.6
TCOF1-201ENST00000323668 RHOHQ15669 191 aa11.3□□□□□ -0.6
TCOF1-201ENST00000323668 ZFP2Q6ZN57 461 aa11.3□□□□□ -0.6
TCOF1-201ENST00000323668 RASL10AQ92737 203 aa11.3□□□□□ -0.6
TCOF1-201ENST00000323668 E9PLD3 99 aa11.3□□□□□ -0.6
TCOF1-201ENST00000323668 TCTEX1D4Q5JR98 221 aa11.3□□□□□ -0.6
TCOF1-201ENST00000323668 INSP01308 110 aa11.3□□□□□ -0.6
TCOF1-201ENST00000323668 NDUFA12Q9UI09 145 aa11.3□□□□□ -0.6
TCOF1-201ENST00000323668 SUMO4Q6EEV6 95 aa11.29□□□□□ -0.6
TCOF1-201ENST00000323668 BAALCQ8WXS3 180 aa11.29□□□□□ -0.6
TCOF1-201ENST00000323668 EBI3Q14213 229 aa11.29□□□□□ -0.6
TCOF1-201ENST00000323668 TMEM95Q3KNT9 176 aa11.29□□□□□ -0.6
TCOF1-201ENST00000323668 SMAD5-AS1Q9Y6J3 95 aa11.29□□□□□ -0.6
TCOF1-201ENST00000323668 SORL1Q92673 2214 aa11.29□□□□□ -0.6
TCOF1-201ENST00000323668 IGHV4-61A0A0C4DH41 118 aa11.29□□□□□ -0.6
TCOF1-201ENST00000323668 TRAV13-1A0A0B4J241 112 aa11.28□□□□□ -0.6
TCOF1-201ENST00000323668 LINC01548A6NM66 108 aa11.28□□□□□ -0.6
TCOF1-201ENST00000323668 TET2Q6N021 2002 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-201ENST00000323668 TRGV4A0A0C4DH28 118 aa11.28□□□□□ -0.6
TCOF1-201ENST00000323668 MED14OSP0DP75 135 aa11.28□□□□□ -0.6
TCOF1-201ENST00000323668 UNQ9165/PRO28630Q6UXU0 137 aa11.28□□□□□ -0.6
TCOF1-201ENST00000323668 RNF185Q96GF1 192 aa11.28□□□□□ -0.6
TCOF1-201ENST00000323668 IGKV2D-26A0A0A0MRZ7 120 aa11.28□□□□□ -0.6
TCOF1-201ENST00000323668 SLC25A20O43772 301 aa11.28□□□□□ -0.6
TCOF1-201ENST00000323668 UBE2E2Q96LR5 201 aa11.28□□□□□ -0.6
TCOF1-201ENST00000323668 PTPN13Q12923 2485 aa11.28□□□□□ -0.6
TCOF1-201ENST00000323668 SCGB1A1P11684 91 aa11.28□□□□□ -0.6
TCOF1-201ENST00000323668 TRAV8-3A0A0A6YYJ7 113 aa11.27□□□□□ -0.6
TCOF1-201ENST00000323668 IGHV3-53P01767 116 aa11.27□□□□□ -0.6
TCOF1-201ENST00000323668 PRIMA1Q86XR5 153 aa11.27□□□□□ -0.6
TCOF1-201ENST00000323668 IGHV4-38-2P0DP08 117 aa11.27□□□□□ -0.61
TCOF1-201ENST00000323668 GATD1Q8NB37 220 aa11.27□□□□□ -0.61
TCOF1-201ENST00000323668 RNASE1P07998 156 aaKnown RBP11.26□□□□□ -0.61
TCOF1-201ENST00000323668 CFC1BP0CG36 223 aa11.26□□□□□ -0.61
TCOF1-201ENST00000323668 CFC1P0CG37 223 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms