RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TMEM14CQ9P0S9 112 aa5.96□□□□□ -1.46
LIMCH1-201ENST00000313860 DOCK5Q9H7D0 1870 aa5.96□□□□□ -1.46
LIMCH1-201ENST00000313860 HILS1P60008 231 aa5.96□□□□□ -1.46
LIMCH1-201ENST00000313860 BRD3OSQ6XYD6 125 aa5.96□□□□□ -1.46
LIMCH1-201ENST00000313860 PLAC8L1A1L4L8 177 aa5.96□□□□□ -1.46
LIMCH1-201ENST00000313860 IGLV3-19P01714 112 aa5.96□□□□□ -1.46
LIMCH1-201ENST00000313860 CTRLP40313 264 aa5.96□□□□□ -1.46
LIMCH1-201ENST00000313860 STRCP1A6NGW2 1772 aa5.96□□□□□ -1.46
LIMCH1-201ENST00000313860 BPTFQ12830 3046 aa5.96□□□□□ -1.46
LIMCH1-201ENST00000313860 MIAQ16674 131 aa5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 IGHV6-1A0A0B4J1U7 121 aa5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 A0A0J9YXV3 536 aa5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 VMO1Q7Z5L0 202 aa5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 APLNQ9ULZ1 77 aa5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 LINC00312Q9Y6C7 94 aa5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 TNRC6AQ8NDV7 1962 aaKnown RBP5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 CD59P13987 128 aa5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 FHL1Q13642 323 aa5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 NFE4Q86UQ8 179 aa5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 COL11A2P13942 1736 aaPredicted RBP5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 RNF5Q99942 180 aa5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 IL17DQ8TAD2 202 aa5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 NUP205Q92621 2012 aa5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 SNRNP200O75643 2136 aaKnown RBP5.95□□□□□ -1.46
LIMCH1-201ENST00000313860 FHL2Q14192 279 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 SIP14410 1827 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 C1orf134Q5TEV5 83 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 CYYR1Q96J86 154 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 ALKAL1Q6UXT8 129 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 CCDC88CQ9P219 2028 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 LST1O00453 97 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 LINC01565O15544 149 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 GNRH2O43555 120 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 TIAF1O95411 115 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 DOCK10Q96BY6 2186 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 MIA3Q5JRA6 1907 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 PRM2P04554 102 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 XGP55808 180 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 Q8N6K4 173 aa5.94□□□□□ -1.46
LIMCH1-201ENST00000313860 EVPLQ92817 2033 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 TRBV10-1A0A0K0K1A3 114 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 TRBV10-3A0A0K0K1G6 114 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 hDV103S1A0JD37 113 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 TSHBP01222 138 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 FAM120AOSQ5T036 256 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 ZNF833PQ6ZTB9 187 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 IGLV3-10A0A075B6K4 115 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 RPL39LQ96EH5 51 aaKnown RBP5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 MRPS12O15235 138 aaKnown RBP5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 MED14OSP0DP75 135 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 CCL4P13236 92 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 RSPO2Q6UXX9 243 aaPredicted RBP5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 LINC01555Q8NAE3 123 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 RALGAPA1Q6GYQ0 2036 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 C2orf70A6NJV1 201 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 MORN2Q502X0 79 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 FAM223AQ8IWN6 122 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 TM2D1Q9BX74 207 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 H3BUX3 64 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 WISP3O95389 354 aaPredicted RBP5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 TMEM190Q8WZ59 177 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 C11orf52Q96A22 123 aa5.93□□□□□ -1.46
LIMCH1-201ENST00000313860 MLANAQ16655 118 aa5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 MDFICQ9P1T7 246 aa5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 LHFPL6Q9Y693 200 aa5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 NUP214P35658 2090 aaPredicted RBP5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 BRCA1P38398 1863 aaKnown RBP5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 CXorf51AA0A1B0GTR3 108 aa5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 PIN1P1O15428 100 aa5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 TMEM14BQ9NUH8 114 aa5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 CTSZQ9UBR2 303 aa5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 ABCA3Q99758 1704 aa5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 H0Y9P7 68 aa5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 ZNF524Q96C55 264 aa5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 KIAA0100Q14667 2235 aaKnown RBP5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 ASCC3Q8N3C0 2202 aaKnown RBP5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 FAM27E3Q08E93 113 aa5.92□□□□□ -1.46
LIMCH1-201ENST00000313860 TP53BP1Q12888 1972 aaPredicted RBP5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 LY75O60449 1722 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 ERC2-IT1O76042 136 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 Q6P435 159 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 LINC00173Q6ZV60 143 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 ARID1AO14497 2285 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 NRXN2Q9P2S2 1712 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 DEFB116Q30KQ4 102 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 TOMM6Q96B49 74 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 HCG22E2RYF7 251 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 H7C423 109 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 C6orf99Q4VX62 202 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 REG3GQ6UW15 175 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 NDUFA11Q86Y39 141 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 ZNF747Q9BV97 191 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 URB1O60287 2271 aaKnown RBP5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 ANK1P16157 1881 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 MGAMO43451 1857 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 SHISA3A0PJX4 238 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 K7EQD1 137 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 LIMD2Q9BT23 127 aa5.91□□□□□ -1.46
LIMCH1-201ENST00000313860 KIAA2026Q5HYC2 2103 aa5.9□□□□□ -1.46
LIMCH1-201ENST00000313860 LINC01547P58512 204 aaPredicted RBP5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms