RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 CRYGDP07320 174 aa9.37□□□□□ -0.91
NUP88-201ENST00000225696 SLC25A16P16260 332 aa9.37□□□□□ -0.91
NUP88-201ENST00000225696 CLEC2AQ6UVW9 174 aa9.37□□□□□ -0.91
NUP88-201ENST00000225696 ZFP2Q6ZN57 461 aa9.37□□□□□ -0.91
NUP88-201ENST00000225696 MRPL53Q96EL3 112 aaKnown RBP9.37□□□□□ -0.91
NUP88-201ENST00000225696 C20orf78Q9BR46 151 aa9.37□□□□□ -0.91
NUP88-201ENST00000225696 HOXA3O43365 443 aaPredicted RBP9.37□□□□□ -0.91
NUP88-201ENST00000225696 DUSP14O95147 198 aaKnown RBP9.37□□□□□ -0.91
NUP88-201ENST00000225696 TSHBP01222 138 aa9.37□□□□□ -0.91
NUP88-201ENST00000225696 RNASE4P34096 147 aaKnown RBP9.37□□□□□ -0.91
NUP88-201ENST00000225696 UBE2E1P51965 193 aa9.37□□□□□ -0.91
NUP88-201ENST00000225696 ORMDL2Q53FV1 153 aa9.37□□□□□ -0.91
NUP88-201ENST00000225696 SPATA25Q9BR10 227 aa9.37□□□□□ -0.91
NUP88-201ENST00000225696 ABCA2Q9BZC7 2435 aa9.37□□□□□ -0.91
NUP88-201ENST00000225696 TRBV7-1A0A0A6YYK4 115 aa9.36□□□□□ -0.91
NUP88-201ENST00000225696 LINC01549A6NIU2 74 aa9.36□□□□□ -0.91
NUP88-201ENST00000225696 ZNF815PA8K554 130 aa9.36□□□□□ -0.91
NUP88-201ENST00000225696 COX6B1P14854 86 aa9.36□□□□□ -0.91
NUP88-201ENST00000225696 S100A4P26447 101 aaKnown RBP9.36□□□□□ -0.91
NUP88-201ENST00000225696 C5orf56Q8N8D9 126 aa9.36□□□□□ -0.91
NUP88-201ENST00000225696 JPT2Q9H910 190 aa9.36□□□□□ -0.91
NUP88-201ENST00000225696 RNASE3P12724 160 aaKnown RBP9.36□□□□□ -0.91
NUP88-201ENST00000225696 NFE4Q86UQ8 179 aa9.36□□□□□ -0.91
NUP88-201ENST00000225696 DPH3P1Q9H4G8 78 aa9.36□□□□□ -0.91
NUP88-201ENST00000225696 MRPL16Q9NX20 251 aaKnown RBP9.36□□□□□ -0.91
NUP88-201ENST00000225696 PHLDA3Q9Y5J5 127 aa9.36□□□□□ -0.91
NUP88-201ENST00000225696 WFDC12Q8WWY7 111 aa9.35□□□□□ -0.91
NUP88-201ENST00000225696 PTH2Q96A98 100 aa9.35□□□□□ -0.91
NUP88-201ENST00000225696 SPOCK3Q9BQ16 436 aa9.35□□□□□ -0.91
NUP88-201ENST00000225696 C11orf86A6NJI1 115 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 SOCS3O14543 225 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 CIDEAO60543 219 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 FHL3Q13643 280 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 CSMD2Q7Z408 3487 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 IGLV4-69A0A075B6H9 119 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 LINC01619G3V211 115 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 NDUFS8O00217 210 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 TSPAN13O95857 204 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 EDN2P20800 178 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 ASIPP42127 132 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 LINC00315P59091 139 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 RPL39P62891 51 aaKnown RBP9.34□□□□□ -0.91
NUP88-201ENST00000225696 SCGB2A2Q13296 93 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 SCGB1D4Q6XE38 83 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 Q6ZS46 218 aa9.34□□□□□ -0.91
NUP88-201ENST00000225696 TRAV21A0A0B4J279 112 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 APOMO95445 188 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 IGHV3-11P01762 117 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 SRD5A1P18405 259 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 ARL3P36405 182 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 TSPEAR-AS2P59090 65 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 RPL11P62913 178 aaKnown RBP9.33□□□□□ -0.92
NUP88-201ENST00000225696 CFAP126Q5VTH2 177 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 C9orf139Q6ZV77 190 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 CUBNO60494 3623 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 CHD8Q9HCK8 2581 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 NCOR2Q9Y618 2525 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 TRAV41A0A0B4J266 112 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 LOC107984156A0A0G2JMH3 177 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 CD7P09564 240 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 UBE2D1P51668 147 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 SRSF9Q13242 221 aaKnown RBP eCLIP9.33□□□□□ -0.92
NUP88-201ENST00000225696 ARL17AQ8IVW1 177 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 LINC00477Q96M19 166 aa9.33□□□□□ -0.92
NUP88-201ENST00000225696 J3QR89 54 aa9.32□□□□□ -0.92
NUP88-201ENST00000225696 NPFFO15130 113 aa9.32□□□□□ -0.92
NUP88-201ENST00000225696 PSMB2P49721 201 aa9.32□□□□□ -0.92
NUP88-201ENST00000225696 LMO4P61968 165 aa9.32□□□□□ -0.92
NUP88-201ENST00000225696 FOXI1Q12951 378 aa9.32□□□□□ -0.92
NUP88-201ENST00000225696 C19orf54Q5BKX5 351 aa9.32□□□□□ -0.92
NUP88-201ENST00000225696 OR10J6PQ8NGY7 276 aa9.32□□□□□ -0.92
NUP88-201ENST00000225696 BPESC1Q9GZL8 116 aa9.32□□□□□ -0.92
NUP88-201ENST00000225696 KIF25-AS1Q9Y6Z4 181 aa9.32□□□□□ -0.92
NUP88-201ENST00000225696 TGFAP01135 160 aa9.31□□□□□ -0.92
NUP88-201ENST00000225696 BRD3OSQ6XYD6 125 aa9.31□□□□□ -0.92
NUP88-201ENST00000225696 ZNF418Q8TF45 676 aaPredicted RBP9.31□□□□□ -0.92
NUP88-201ENST00000225696 FAM19A4Q96LR4 140 aa9.31□□□□□ -0.92
NUP88-201ENST00000225696 CDIP1Q9H305 208 aa9.31□□□□□ -0.92
NUP88-201ENST00000225696 TP53TG1Q9Y2A0 90 aa9.31□□□□□ -0.92
NUP88-201ENST00000225696 LENEPQ9Y5L5 61 aa9.31□□□□□ -0.92
NUP88-201ENST00000225696 SPG11Q96JI7 2443 aa9.31□□□□□ -0.92
NUP88-201ENST00000225696 A0A087WWL8 130 aa9.31□□□□□ -0.92
NUP88-201ENST00000225696 SCGB1A1P11684 91 aa9.31□□□□□ -0.92
NUP88-201ENST00000225696 SORL1Q92673 2214 aa9.31□□□□□ -0.92
NUP88-201ENST00000225696 A0A0J9YY99 117 aa9.3□□□□□ -0.92
NUP88-201ENST00000225696 IGIPA6NJ69 53 aa9.3□□□□□ -0.92
NUP88-201ENST00000225696 SYT8Q8NBV8 401 aa9.3□□□□□ -0.92
NUP88-201ENST00000225696 ZNRF2Q8NHG8 242 aa9.3□□□□□ -0.92
NUP88-201ENST00000225696 ATP6V0BQ99437 205 aa9.3□□□□□ -0.92
NUP88-201ENST00000225696 C1QTNF4Q9BXJ3 329 aa9.3□□□□□ -0.92
NUP88-201ENST00000225696 ITPR1Q14643 2758 aa9.29□□□□□ -0.92
NUP88-201ENST00000225696 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.29□□□□□ -0.923e-8■■■■■ 27.2
NUP88-201ENST00000225696 UBE2D3P61077 147 aa9.29□□□□□ -0.92
NUP88-201ENST00000225696 UBE2D2P62837 147 aa9.29□□□□□ -0.92
NUP88-201ENST00000225696 NDUFA11Q86Y39 141 aa9.29□□□□□ -0.92
NUP88-201ENST00000225696 DLX4Q92988 240 aaPredicted RBP9.29□□□□□ -0.92
NUP88-201ENST00000225696 CARD19Q96LW7 228 aa9.29□□□□□ -0.92
NUP88-201ENST00000225696 OPRPNQ99935 248 aaPredicted RBP9.29□□□□□ -0.92
NUP88-201ENST00000225696 UBTD1Q9HAC8 227 aa9.29□□□□□ -0.92
NUP88-201ENST00000225696 OVOL1O14753 267 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms