RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 TCRAP04437 139 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 NPIPB5A8MRT5 1133 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 CFPP27918 469 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 ZNF524Q96C55 264 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 ADMP35318 185 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 C5orf24Q7Z6I8 188 aa3.98□□□□□ -1.77
SCN1A-218ENST00000640036 RAI1Q7Z5J4 1906 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-218ENST00000640036 NDUFS5O43920 106 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 IFITM1P13164 125 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 CD300EQ496F6 205 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-218ENST00000640036 CENPWQ5EE01 88 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 RPP25LQ8N5L8 163 aaKnown RBP3.97□□□□□ -1.77
SCN1A-218ENST00000640036 TBX6O95947 436 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-218ENST00000640036 RBM3P98179 157 aaKnown RBP3.97□□□□□ -1.77
SCN1A-218ENST00000640036 ZNF124Q15973 351 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 GCHFRP30047 84 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 LINC01551Q86U37 167 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 SPATA3Q8NHX4 192 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 LINC00614P0C842 121 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 MPZP25189 248 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 ZNF79Q15937 498 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 PSG8Q9UQ74 426 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 IGHV1OR15-1A0A075B7D0 117 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 OXLD1Q5BKU9 147 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 MRPL55Q7Z7F7 128 aaKnown RBP3.97□□□□□ -1.77
SCN1A-218ENST00000640036 LYPD1Q8N2G4 141 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 ZC2HC1AQ96GY0 325 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 LYZL4Q96KX0 146 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 EP400Q96L91 3159 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 IGF1P05019 195 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 C5orf66Q9H5L9 145 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 IGHV4OR15-8A0A075B7B6 117 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 A0A087WW49 117 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 NDUFA3O95167 84 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 NDUFA7O95182 113 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 LMO4P61968 165 aa3.97□□□□□ -1.77
SCN1A-218ENST00000640036 BAHCC1Q9P281 2608 aa3.96□□□□□ -1.77
SCN1A-218ENST00000640036 LYRM9A8MSI8 78 aa3.96□□□□□ -1.77
SCN1A-218ENST00000640036 GZMMP51124 257 aa3.96□□□□□ -1.77
SCN1A-218ENST00000640036 KLF5Q13887 457 aaPredicted RBP3.96□□□□□ -1.77
SCN1A-218ENST00000640036 Q6ZSV7 163 aa3.96□□□□□ -1.77
SCN1A-218ENST00000640036 C8orf31Q8N9H6 132 aa3.96□□□□□ -1.77
SCN1A-218ENST00000640036 TMEM141Q96I45 108 aa3.96□□□□□ -1.77
SCN1A-218ENST00000640036 C2orf70A6NJV1 201 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 M0R2N4 97 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 PROP1O75360 226 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 PRB2P02812 416 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-218ENST00000640036 BTCP35070 178 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 Q6ZR03 302 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 LY6G5BQ8NDX9 201 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 ZNF747Q9BV97 191 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 EPDR1Q9UM22 224 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 LRCOL1A6NCL2 159 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 BUB3O43684 328 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 SEM1Q6ZVN7 128 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 LINC01006Q8NI28 216 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 SMIM9A6NGZ8 99 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 UBE2D1P51668 147 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 YPEL3P61236 119 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-218ENST00000640036 BAALCQ8WXS3 180 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 PTPRBP23467 1997 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 PTPRSQ13332 1948 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 TIRAPP58753 221 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 APRG1Q8IVJ8 170 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 C5orf56Q8N8D9 126 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 NDUFA12Q9UI09 145 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 IGHG2P01859 326 aa3.96□□□□□ -1.78
SCN1A-218ENST00000640036 IGHV3-16A0A0C4DH30 117 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 F6UB75 175 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 LINC00482Q8N8I6 264 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 GTSF1Q8WW33 167 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 NRG4Q8WWG1 115 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 SCRT1Q9BWW7 348 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 LY96Q9Y6Y9 160 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 IGLV2-18A0A075B6J9 118 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 F8W1H4 67 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 OCIAD2Q56VL3 154 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 Q6P435 159 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 DEFB125Q8N687 156 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 HIGD1CA8MV81 97 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 ATOX1O00244 68 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 MIFP14174 115 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 LAIR2Q6ISS4 152 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 GAGE2AQ6NT46 116 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 IFI27L1Q96BM0 104 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 AJUBAQ96IF1 538 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 C8orf49Q96NF6 230 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 TIMM21Q9BVV7 248 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 A0A1B0GX51 115 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 HLA-DMBP28068 263 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 LINC01620Q4KN68 170 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 ATP6V0E2Q8NHE4 81 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 OSTCQ9NRP0 149 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 TRAV13-1A0A0B4J241 112 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 OTX1P32242 354 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-218ENST00000640036 GAGE6Q13070 117 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 Q6ZVH6 145 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 TRPT1Q86TN4 253 aaKnown RBP3.95□□□□□ -1.78
SCN1A-218ENST00000640036 IGKV2-40A0A087WW87 121 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-218ENST00000640036 IGKV2D-40P01614 121 aaPredicted RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms