RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 IGHV3-33P01772 117 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 PRB4P10163 310 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-213ENST00000636759 GATA1P15976 413 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-213ENST00000636759 RPL35AP18077 110 aaKnown RBP5.31□□□□□ -1.56
SCN1A-213ENST00000636759 THAP8Q8NA92 274 aa5.31□□□□□ -1.56
SCN1A-213ENST00000636759 A0A0J9YY99 117 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 ZNF785A8K8V0 405 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 FSTL3O95633 263 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 CRYGDP07320 174 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 SAA2P0DJI9 122 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-213ENST00000636759 CRIP1P50238 77 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 DTX2Q86UW9 622 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 LEAP2Q969E1 77 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 PRR25Q96S07 402 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 METTL26Q96S19 204 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 DCHS1Q96JQ0 3298 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-213ENST00000636759 LINC01546A6NGU7 62 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 SAA1P0DJI8 122 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-213ENST00000636759 ZNF22P17026 224 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-213ENST00000636759 CNTFRP26992 372 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 MAGEA5P43359 124 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 DLX1P56177 255 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 C8orf49Q96NF6 230 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 SCNM1Q9BWG6 230 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 PLCE1Q9P212 2302 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 BOD1L1Q8NFC6 3051 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 IGKV1D-37A0A075B6S9 117 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 IGHV3-30P01768 117 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 IGHV3-30-5P0DP03 117 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 CCL11P51671 97 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 IL17RELQ6ZVW7 336 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 C8orf31Q8N9H6 132 aa5.3□□□□□ -1.56
SCN1A-213ENST00000636759 KALRNO60229 2985 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 KLRB1Q12918 225 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 IGFL2Q6UWQ7 119 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 PRR7Q8TB68 274 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 RNF185Q96GF1 192 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 MSRB1Q9NZV6 116 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 METRNQ9UJH8 293 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 SVILO95425 2214 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 ARFGEF3Q5TH69 2177 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 RS1O15537 224 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 GAS8-AS1O95177 125 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 LGALS3P17931 250 aaKnown RBP5.29□□□□□ -1.56
SCN1A-213ENST00000636759 RNF152Q8N8N0 203 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 PYGO1Q9Y3Y4 419 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 PFN2P35080 140 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 ORMDL2Q53FV1 153 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 PAPPA-AS1Q5QFB9 102 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 FAM186AA6NE01 2351 aa5.29□□□□□ -1.56
SCN1A-213ENST00000636759 ABCA1O95477 2261 aa5.28□□□□□ -1.56
SCN1A-213ENST00000636759 SLC25A29Q8N8R3 303 aa5.28□□□□□ -1.56
SCN1A-213ENST00000636759 NDUFA4L2Q9NRX3 87 aa5.28□□□□□ -1.56
SCN1A-213ENST00000636759 RPUSD1Q9UJJ7 312 aaKnown RBP5.28□□□□□ -1.56
SCN1A-213ENST00000636759 MED13Q9UHV7 2174 aa5.28□□□□□ -1.56
SCN1A-213ENST00000636759 IGHV3-21A0A0B4J1V1 117 aa5.28□□□□□ -1.56
SCN1A-213ENST00000636759 A0A0B4J2C4 111 aa5.28□□□□□ -1.56
SCN1A-213ENST00000636759 HOXB4P17483 251 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-213ENST00000636759 FAM90A1Q86YD7 464 aa5.28□□□□□ -1.56
SCN1A-213ENST00000636759 TMEM14CQ9P0S9 112 aa5.28□□□□□ -1.56
SCN1A-213ENST00000636759 PCNX2A6NKB5 2137 aa5.28□□□□□ -1.56
SCN1A-213ENST00000636759 IGKV1-16P04430 117 aa5.28□□□□□ -1.56
SCN1A-213ENST00000636759 ZNF71Q9NQZ8 489 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-213ENST00000636759 MRPL36Q9P0J6 103 aaKnown RBP5.28□□□□□ -1.56
SCN1A-213ENST00000636759 SPRR3Q9UBC9 169 aa5.28□□□□□ -1.56
SCN1A-213ENST00000636759 BDP1A6H8Y1 2624 aa5.28□□□□□ -1.56
SCN1A-213ENST00000636759 TRBV19A0A075B6N1 114 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 EDN2P20800 178 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 ATP1A1-AS1Q5TC04 95 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 Q5XG85 94 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 LYPD1Q8N2G4 141 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 H7C423 109 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 EGR2P11161 476 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-213ENST00000636759 CXCL5P42830 114 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 HCP5Q6MZN7 132 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 Q6ZS46 218 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 C10orf105Q8TEF2 133 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 DMXL2Q8TDJ6 3036 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 COX6B1P14854 86 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 ZNF672Q499Z4 452 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-213ENST00000636759 C10orf55Q5SWW7 151 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 C1orf229Q6ZS94 237 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-213ENST00000636759 NEXN-AS1Q8NBZ9 246 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 LINC01600Q96MT4 127 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 CXXC4Q9H2H0 198 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 PEMTQ9UBM1 199 aa5.27□□□□□ -1.57
SCN1A-213ENST00000636759 PRR14LQ5THK1 2151 aa5.26□□□□□ -1.57
SCN1A-213ENST00000636759 ZGRF1Q86YA3 2104 aa5.26□□□□□ -1.57
SCN1A-213ENST00000636759 A0A0G2JNJ9 132 aa5.26□□□□□ -1.57
SCN1A-213ENST00000636759 TRBV30A0A0K0K1B3 111 aa5.26□□□□□ -1.57
SCN1A-213ENST00000636759 WT1-ASQ06250 92 aa5.26□□□□□ -1.57
SCN1A-213ENST00000636759 TMEM263Q8WUH6 116 aaKnown RBP5.26□□□□□ -1.57
SCN1A-213ENST00000636759 Q9UFV3 132 aa5.26□□□□□ -1.57
SCN1A-213ENST00000636759 IGLV2-18A0A075B6J9 118 aa5.26□□□□□ -1.57
SCN1A-213ENST00000636759 TRAV8-3A0A0A6YYJ7 113 aa5.26□□□□□ -1.57
SCN1A-213ENST00000636759 TRIAP1O43715 76 aa5.26□□□□□ -1.57
SCN1A-213ENST00000636759 CCL8P80075 99 aa5.26□□□□□ -1.57
SCN1A-213ENST00000636759 EEF1AKMT3Q96AZ1 226 aa5.26□□□□□ -1.57
SCN1A-213ENST00000636759 FAM19A4Q96LR4 140 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms