RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 RNASE6Q93091 150 aaKnown RBP10.22□□□□□ -0.77
MSH6-214ENST00000616033 CDIP1Q9H305 208 aa10.22□□□□□ -0.77
MSH6-214ENST00000616033 E9PLD3 99 aa10.22□□□□□ -0.77
MSH6-214ENST00000616033 TMEM30BQ3MIR4 351 aa10.22□□□□□ -0.77
MSH6-214ENST00000616033 PHLDA1Q8WV24 401 aaPredicted RBP10.22□□□□□ -0.77
MSH6-214ENST00000616033 PPDPFQ9H3Y8 114 aa10.22□□□□□ -0.77
MSH6-214ENST00000616033 C21orf62Q9NYP8 219 aa10.22□□□□□ -0.77
MSH6-214ENST00000616033 CUBNO60494 3623 aa10.22□□□□□ -0.77
MSH6-214ENST00000616033 NXT2Q9NPJ8 142 aaKnown RBP10.21□□□□□ -0.77
MSH6-214ENST00000616033 TRAV8-2A0A0B4J237 113 aa10.21□□□□□ -0.77
MSH6-214ENST00000616033 M0QXV9 152 aa10.21□□□□□ -0.77
MSH6-214ENST00000616033 U3KQK5 164 aa10.21□□□□□ -0.77
MSH6-214ENST00000616033 HOXA3O43365 443 aaPredicted RBP10.21□□□□□ -0.78
MSH6-214ENST00000616033 TSPAN13O95857 204 aa10.21□□□□□ -0.78
MSH6-214ENST00000616033 HOXB4P17483 251 aaPredicted RBP10.21□□□□□ -0.78
MSH6-214ENST00000616033 NDPQ00604 133 aa10.21□□□□□ -0.78
MSH6-214ENST00000616033 ASCL5Q7RTU5 278 aa10.21□□□□□ -0.78
MSH6-214ENST00000616033 RPL7P18124 248 aaKnown RBP10.2□□□□□ -0.78
MSH6-214ENST00000616033 PVRIGQ6DKI7 326 aa10.2□□□□□ -0.78
MSH6-214ENST00000616033 FAM159AQ6UWV7 190 aa10.2□□□□□ -0.78
MSH6-214ENST00000616033 TM2D2Q9BX73 214 aa10.2□□□□□ -0.78
MSH6-214ENST00000616033 CELSR1Q9NYQ6 3014 aa10.2□□□□□ -0.78
MSH6-214ENST00000616033 SCGB3A1Q96QR1 104 aa10.2□□□□□ -0.78
MSH6-214ENST00000616033 LAGE3Q14657 143 aa10.2□□□□□ -0.78
MSH6-214ENST00000616033 BEX4Q9NWD9 120 aaPredicted RBP10.2□□□□□ -0.78
MSH6-214ENST00000616033 RAXQ9Y2V3 346 aa10.2□□□□□ -0.78
MSH6-214ENST00000616033 COL27A1Q8IZC6 1860 aaPredicted RBP10.19□□□□□ -0.78
MSH6-214ENST00000616033 ZNF815PA8K554 130 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 PAX8Q06710 450 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 RRN3P1Q2M238 152 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 LINC00311Q8N616 119 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 DLX6P56179 175 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 GAGE2BQ13066 116 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 GAGE2EQ4V326 116 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 YAE1D1Q9NRH1 226 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 GAGE2DQ9UEU5 116 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 NACAE9PAV3 2078 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 NBR2O15453 112 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 ATP5LO75964 103 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 CRYGBP07316 175 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 S100A4P26447 101 aaKnown RBP10.19□□□□□ -0.78
MSH6-214ENST00000616033 RPL11P62913 178 aaKnown RBP10.19□□□□□ -0.78
MSH6-214ENST00000616033 C11orf21Q9P2W6 132 aa10.19□□□□□ -0.78
MSH6-214ENST00000616033 A0A0G2JNJ9 132 aa10.18□□□□□ -0.78
MSH6-214ENST00000616033 MRPS12O15235 138 aaKnown RBP10.18□□□□□ -0.78
MSH6-214ENST00000616033 LYPD1Q8N2G4 141 aa10.18□□□□□ -0.78
MSH6-214ENST00000616033 Q9UFV3 132 aa10.18□□□□□ -0.78
MSH6-214ENST00000616033 LINC00527Q9UJ94 153 aa10.18□□□□□ -0.78
MSH6-214ENST00000616033 GAGE12JA6NER3 117 aa10.18□□□□□ -0.78
MSH6-214ENST00000616033 GAGE7O76087 117 aa10.18□□□□□ -0.78
MSH6-214ENST00000616033 IGLV1-47P01700 117 aa10.18□□□□□ -0.78
MSH6-214ENST00000616033 GAGE12FP0CL80 117 aa10.18□□□□□ -0.78
MSH6-214ENST00000616033 GAGE12GP0CL81 117 aa10.18□□□□□ -0.78
MSH6-214ENST00000616033 GAGE12IP0CL82 117 aa10.18□□□□□ -0.78
MSH6-214ENST00000616033 GAGE4Q13068 117 aa10.18□□□□□ -0.78
MSH6-214ENST00000616033 SLC25A16P16260 332 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 RPL39LQ96EH5 51 aaKnown RBP10.17□□□□□ -0.78
MSH6-214ENST00000616033 AJUBAQ96IF1 538 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 SMAD5-AS1Q9Y6J3 95 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 C2CD3Q4AC94 2353 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 IGKV3D-20A0A0C4DH25 116 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 IGLC6P0CF74 106 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 PF4V1P10720 104 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 C14orf178Q8N769 122 aaPredicted RBP10.17□□□□□ -0.78
MSH6-214ENST00000616033 LINC01560Q8TB33 94 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 PLEKHB2Q96CS7 222 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 IGHV3-64A0A075B6Q5 118 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 E7EQL1 145 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 IGF1P05019 195 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 MEIG1Q5JSS6 88 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 Q8N8P6 123 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 HIGD1BQ9P298 99 aa10.17□□□□□ -0.78
MSH6-214ENST00000616033 SNCGO76070 127 aa10.16□□□□□ -0.78
MSH6-214ENST00000616033 THBDP07204 575 aa10.16□□□□□ -0.78
MSH6-214ENST00000616033 FANCD2OSQ96PS1 177 aa10.16□□□□□ -0.78
MSH6-214ENST00000616033 TRAV4A0A0B4J268 109 aa10.16□□□□□ -0.78
MSH6-214ENST00000616033 PRR30Q53SZ7 412 aaPredicted RBP10.16□□□□□ -0.78
MSH6-214ENST00000616033 TMEM78Q5T7P6 136 aa10.16□□□□□ -0.78
MSH6-214ENST00000616033 PRADC1Q9BSG0 188 aa10.16□□□□□ -0.78
MSH6-214ENST00000616033 CLEC19AQ6UXS0 136 aa10.16□□□□□ -0.78
MSH6-214ENST00000616033 RAX2Q96IS3 184 aa10.16□□□□□ -0.78
MSH6-214ENST00000616033 CRLF1O75462 422 aa10.15□□□□□ -0.78
MSH6-214ENST00000616033 CEACAM4O75871 244 aa10.15□□□□□ -0.78
MSH6-214ENST00000616033 AGPAT4-IT1Q9H0P7 198 aa10.15□□□□□ -0.78
MSH6-214ENST00000616033 CSPG4Q6UVK1 2322 aa10.15□□□□□ -0.78
MSH6-214ENST00000616033 A0A087WX48 190 aa10.15□□□□□ -0.78
MSH6-214ENST00000616033 MYMXA0A1B0GTQ4 84 aa10.15□□□□□ -0.78
MSH6-214ENST00000616033 SRSF1Q07955 248 aaKnown RBP eCLIP10.14□□□□□ -0.796e-6■■■■□ 21.2
MSH6-214ENST00000616033 GATD1Q8NB37 220 aa10.14□□□□□ -0.79
MSH6-214ENST00000616033 IGHG4P01861 327 aa10.14□□□□□ -0.79
MSH6-214ENST00000616033 RAB1BQ9H0U4 201 aa10.14□□□□□ -0.79
MSH6-214ENST00000616033 UBTD1Q9HAC8 227 aa10.14□□□□□ -0.79
MSH6-214ENST00000616033 C15orf32Q32M92 178 aa10.14□□□□□ -0.79
MSH6-214ENST00000616033 DPM3Q9P2X0 92 aa10.14□□□□□ -0.79
MSH6-214ENST00000616033 LOC107984640A0A0U1RRK4 108 aa10.13□□□□□ -0.79
MSH6-214ENST00000616033 CTSGP08311 255 aa10.13□□□□□ -0.79
MSH6-214ENST00000616033 PDE6HQ13956 83 aa10.13□□□□□ -0.79
MSH6-214ENST00000616033 SMCPP49901 116 aaPredicted RBP10.13□□□□□ -0.79
MSH6-214ENST00000616033 TMEM170BQ5T4T1 132 aa10.13□□□□□ -0.79
MSH6-214ENST00000616033 MORN3Q6PF18 240 aaPredicted RBP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms