RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 RBMY1EA6NEQ0 496 aaKnown RBP7.7□□□□□ -1.18
VPS4B-204ENST00000589604 FABP5P3A8MUU1 101 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 KLLNB2CW77 178 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 RBMY1DP0C7P1 496 aaKnown RBP7.7□□□□□ -1.18
VPS4B-204ENST00000589604 FRMD6-AS1P0C7T7 363 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 GZMBP10144 247 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 HLA-DRB4P13762 266 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 RAB5AP20339 215 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 OR2D3Q8NGH3 330 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 GTSF1Q8WW33 167 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 DAZAP1Q96EP5 407 aaKnown RBP7.7□□□□□ -1.18
VPS4B-204ENST00000589604 HLA-DRB4X5D2U9 266 aa7.7□□□□□ -1.18
VPS4B-204ENST00000589604 A0A1W2PPQ1 181 aa7.69□□□□□ -1.18
VPS4B-204ENST00000589604 TYMSP04818 313 aa7.69□□□□□ -1.18
VPS4B-204ENST00000589604 FOXA3P55318 350 aaPredicted RBP7.69□□□□□ -1.18
VPS4B-204ENST00000589604 TCL1AP56279 114 aa7.69□□□□□ -1.18
VPS4B-204ENST00000589604 EBLN2Q6P2I7 272 aa7.69□□□□□ -1.18
VPS4B-204ENST00000589604 FAM210BQ96KR6 192 aa7.69□□□□□ -1.18
VPS4B-204ENST00000589604 NEU1Q99519 415 aa7.69□□□□□ -1.18
VPS4B-204ENST00000589604 MRPL18Q9H0U6 180 aaKnown RBP7.69□□□□□ -1.18
VPS4B-204ENST00000589604 TRAV9-1A0A075B6T8 112 aa7.68□□□□□ -1.18
VPS4B-204ENST00000589604 IGKV3D-20A0A0C4DH25 116 aa7.68□□□□□ -1.18
VPS4B-204ENST00000589604 PRSS29PA6NIE9 313 aa7.68□□□□□ -1.18
VPS4B-204ENST00000589604 A8MWL6 223 aa7.68□□□□□ -1.18
VPS4B-204ENST00000589604 DUSP14O95147 198 aaKnown RBP7.68□□□□□ -1.18
VPS4B-204ENST00000589604 S100PP25815 95 aa7.68□□□□□ -1.18
VPS4B-204ENST00000589604 ACTL10Q5JWF8 245 aa7.68□□□□□ -1.18
VPS4B-204ENST00000589604 Q6AWC8 147 aa7.68□□□□□ -1.18
VPS4B-204ENST00000589604 KCNIP4Q6PIL6 250 aa7.68□□□□□ -1.18
VPS4B-204ENST00000589604 NUP35Q8NFH5 326 aa7.68□□□□□ -1.18
VPS4B-204ENST00000589604 FAM110AQ9BQ89 295 aa7.68□□□□□ -1.18
VPS4B-204ENST00000589604 GFRA4Q9GZZ7 299 aa7.68□□□□□ -1.18
VPS4B-204ENST00000589604 FAM231BA6NCW3 169 aa7.67□□□□□ -1.18
VPS4B-204ENST00000589604 PHOX2AO14813 284 aa7.67□□□□□ -1.18
VPS4B-204ENST00000589604 ZNF324O75467 553 aaPredicted RBP7.67□□□□□ -1.18
VPS4B-204ENST00000589604 IGKV3-20P01619 116 aa7.67□□□□□ -1.18
VPS4B-204ENST00000589604 TGP01266 2768 aa7.67□□□□□ -1.18
VPS4B-204ENST00000589604 TMEM189A5PLL7 270 aa7.67□□□□□ -1.18
VPS4B-204ENST00000589604 HIGD1CA8MV81 97 aa7.67□□□□□ -1.18
VPS4B-204ENST00000589604 M0R2Z0 102 aa7.67□□□□□ -1.18
VPS4B-204ENST00000589604 GPX1P07203 203 aa7.67□□□□□ -1.18
VPS4B-204ENST00000589604 RNASE4P34096 147 aaKnown RBP7.67□□□□□ -1.18
VPS4B-204ENST00000589604 MUC4Q99102 2169 aa7.66□□□□□ -1.18
VPS4B-204ENST00000589604 TMSB15BA0A087X1C1 80 aa7.66□□□□□ -1.18
VPS4B-204ENST00000589604 OR11H12B2RN74 326 aa7.66□□□□□ -1.18
VPS4B-204ENST00000589604 CRXO43186 299 aaPredicted RBP7.66□□□□□ -1.18
VPS4B-204ENST00000589604 ORM1P02763 201 aa7.66□□□□□ -1.18
VPS4B-204ENST00000589604 IGLC6P0CF74 106 aa7.66□□□□□ -1.18
VPS4B-204ENST00000589604 LEPP41159 167 aa7.66□□□□□ -1.18
VPS4B-204ENST00000589604 SPINK13Q1W4C9 94 aa7.66□□□□□ -1.18
VPS4B-204ENST00000589604 GFI1BQ5VTD9 330 aa7.66□□□□□ -1.18
VPS4B-204ENST00000589604 DEFB125Q8N687 156 aa7.66□□□□□ -1.18
VPS4B-204ENST00000589604 BTF3L4Q96K17 158 aa7.66□□□□□ -1.18
VPS4B-204ENST00000589604 SRD5A3Q9H8P0 318 aa7.66□□□□□ -1.18
VPS4B-204ENST00000589604 NAT8BQ9UHF3 227 aa7.66□□□□□ -1.18
VPS4B-204ENST00000589604 NBEAL2Q6ZNJ1 2754 aa7.66□□□□□ -1.18
VPS4B-204ENST00000589604 TRAV21A0A0B4J279 112 aa7.65□□□□□ -1.18
VPS4B-204ENST00000589604 A0A1B0GXF2 115 aa7.65□□□□□ -1.18
VPS4B-204ENST00000589604 SPINK4O60575 86 aa7.65□□□□□ -1.18
VPS4B-204ENST00000589604 CDKN1BP46527 198 aa7.65□□□□□ -1.18
VPS4B-204ENST00000589604 RPS10P46783 165 aaKnown RBP7.65□□□□□ -1.18
VPS4B-204ENST00000589604 TRPT1Q86TN4 253 aaKnown RBP7.65□□□□□ -1.18
VPS4B-204ENST00000589604 PGLYRP4Q96LB8 373 aa7.65□□□□□ -1.18
VPS4B-204ENST00000589604 TRAV12-2A0A075B6T6 113 aa7.64□□□□□ -1.19
VPS4B-204ENST00000589604 C7orf71A4D174 169 aa7.64□□□□□ -1.19
VPS4B-204ENST00000589604 RBMY1A1P0DJD3 496 aaKnown RBP7.64□□□□□ -1.19
VPS4B-204ENST00000589604 RBMY1CP0DJD4 496 aa7.64□□□□□ -1.19
VPS4B-204ENST00000589604 CMC4P56277 68 aaPredicted RBP7.64□□□□□ -1.19
VPS4B-204ENST00000589604 FXYD7P58549 80 aa7.64□□□□□ -1.19
VPS4B-204ENST00000589604 RPS20P60866 119 aaKnown RBP7.64□□□□□ -1.19
VPS4B-204ENST00000589604 RBMY1FQ15415 496 aaKnown RBP7.64□□□□□ -1.19
VPS4B-204ENST00000589604 ANXA2RQ3ZCQ2 193 aa7.64□□□□□ -1.19
VPS4B-204ENST00000589604 ZMAT5Q9UDW3 170 aaKnown RBP7.64□□□□□ -1.19
VPS4B-204ENST00000589604 TENM3Q9P273 2699 aa7.64□□□□□ -1.19
VPS4B-204ENST00000589604 TRAV12-3A0A0B4J271 114 aa7.63□□□□□ -1.19
VPS4B-204ENST00000589604 GRIFINA4D1Z8 144 aa7.63□□□□□ -1.19
VPS4B-204ENST00000589604 IGHV4-30-4P0DP06 118 aa7.63□□□□□ -1.19
VPS4B-204ENST00000589604 TSPOP30536 169 aa7.63□□□□□ -1.19
VPS4B-204ENST00000589604 MRPL54Q6P161 138 aaKnown RBP7.63□□□□□ -1.19
VPS4B-204ENST00000589604 LYZL1Q6UWQ5 148 aa7.63□□□□□ -1.19
VPS4B-204ENST00000589604 MRAPQ8TCY5 172 aa7.63□□□□□ -1.19
VPS4B-204ENST00000589604 TRGC2P03986 189 aa7.63□□□□□ -1.19
VPS4B-204ENST00000589604 GIG44P09565 113 aaPredicted RBP7.63□□□□□ -1.19
VPS4B-204ENST00000589604 ARMS2P0C7Q2 107 aa7.63□□□□□ -1.19
VPS4B-204ENST00000589604 CTRLP40313 264 aa7.63□□□□□ -1.19
VPS4B-204ENST00000589604 DNLZQ5SXM8 178 aa7.63□□□□□ -1.19
VPS4B-204ENST00000589604 TMEM136Q6ZRR5 245 aa7.63□□□□□ -1.19
VPS4B-204ENST00000589604 GTSCR1Q86UQ5 136 aa7.63□□□□□ -1.19
VPS4B-204ENST00000589604 SSBP4Q9BWG4 385 aaPredicted RBP7.63□□□□□ -1.19
VPS4B-204ENST00000589604 DNAH9Q9NYC9 4486 aa7.63□□□□□ -1.19
VPS4B-204ENST00000589604 XKRY2A2RUG3 117 aa7.62□□□□□ -1.19
VPS4B-204ENST00000589604 GNRH2O43555 120 aa7.62□□□□□ -1.19
VPS4B-204ENST00000589604 TDRG1Q3Y452 100 aa7.62□□□□□ -1.19
VPS4B-204ENST00000589604 DEFB121Q5J5C9 76 aa7.62□□□□□ -1.19
VPS4B-204ENST00000589604 MUC21Q5SSG8 566 aa7.62□□□□□ -1.19
VPS4B-204ENST00000589604 ATP5L2Q7Z4Y8 100 aa7.62□□□□□ -1.19
VPS4B-204ENST00000589604 STHQ8IWL8 128 aa7.62□□□□□ -1.19
VPS4B-204ENST00000589604 CNFNQ9BYD5 112 aa7.62□□□□□ -1.19
VPS4B-204ENST00000589604 SNAI2O43623 268 aa7.61□□□□□ -1.19
VPS4B-204ENST00000589604 DGAT2L7PQ6IED9 249 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms