RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 FER1L6Q2WGJ9 1857 aa3.4□□□□□ -1.87
VMP1-208ENST00000588617 RAB37Q96AX2 223 aa3.4□□□□□ -1.87
VMP1-208ENST00000588617 RTTNQ86VV8 2226 aa3.39□□□□□ -1.87
VMP1-208ENST00000588617 A0A1B0GW64 132 aa3.39□□□□□ -1.87
VMP1-208ENST00000588617 PVALEFA0A1B0GWK0 134 aa3.39□□□□□ -1.87
VMP1-208ENST00000588617 C5orf58C9J3I9 102 aa3.39□□□□□ -1.87
VMP1-208ENST00000588617 OR2H2O95918 312 aa3.39□□□□□ -1.87
VMP1-208ENST00000588617 SCTP09683 121 aa3.39□□□□□ -1.87
VMP1-208ENST00000588617 SRP9P49458 86 aaKnown RBP3.39□□□□□ -1.87
VMP1-208ENST00000588617 DSCR4P56555 118 aaPredicted RBP3.39□□□□□ -1.87
VMP1-208ENST00000588617 C10orf55Q5SWW7 151 aa3.39□□□□□ -1.87
VMP1-208ENST00000588617 HSPB8Q9UJY1 196 aa3.39□□□□□ -1.87
VMP1-208ENST00000588617 BRWD1Q9NSI6 2320 aa3.39□□□□□ -1.87
VMP1-208ENST00000588617 COL5A1P20908 1838 aaPredicted RBP3.39□□□□□ -1.87
VMP1-208ENST00000588617 CDK5RAP2Q96SN8 1893 aa3.39□□□□□ -1.87
VMP1-208ENST00000588617 ARFGEF1Q9Y6D6 1849 aa3.38□□□□□ -1.87
VMP1-208ENST00000588617 TRGV2A0A075B6R0 118 aa3.38□□□□□ -1.87
VMP1-208ENST00000588617 FABP4P15090 132 aa3.38□□□□□ -1.87
VMP1-208ENST00000588617 CRYGSP22914 178 aa3.38□□□□□ -1.87
VMP1-208ENST00000588617 RPL22P35268 128 aaKnown RBP3.38□□□□□ -1.87
VMP1-208ENST00000588617 MRPS36P82909 103 aaKnown RBP3.38□□□□□ -1.87
VMP1-208ENST00000588617 KRTAP13-4Q3LI77 160 aa3.38□□□□□ -1.87
VMP1-208ENST00000588617 LRRC18Q8N456 261 aa3.38□□□□□ -1.87
VMP1-208ENST00000588617 MYH1P12882 1939 aa3.38□□□□□ -1.87
VMP1-208ENST00000588617 GBF1Q92538 1859 aa3.37□□□□□ -1.87
VMP1-208ENST00000588617 E7EUB6 86 aa3.37□□□□□ -1.87
VMP1-208ENST00000588617 PAEPP09466 180 aa3.37□□□□□ -1.87
VMP1-208ENST00000588617 MAXP61244 160 aa3.37□□□□□ -1.87
VMP1-208ENST00000588617 SMIM21Q3B7S5 101 aa3.37□□□□□ -1.87
VMP1-208ENST00000588617 Q5XG85 94 aa3.37□□□□□ -1.87
VMP1-208ENST00000588617 KRTAP5-2Q701N4 177 aa3.37□□□□□ -1.87
VMP1-208ENST00000588617 MORN4Q8NDC4 146 aa3.37□□□□□ -1.87
VMP1-208ENST00000588617 ZNF625Q96I27 306 aaPredicted RBP3.37□□□□□ -1.87
VMP1-208ENST00000588617 GGACTQ9BVM4 153 aa3.37□□□□□ -1.87
VMP1-208ENST00000588617 TPRKBQ9Y3C4 175 aa3.37□□□□□ -1.87
VMP1-208ENST00000588617 HEATR5BQ9P2D3 2071 aa3.36□□□□□ -1.87
VMP1-208ENST00000588617 TRAV10A0A0B4J240 114 aa3.36□□□□□ -1.87
VMP1-208ENST00000588617 MT-ND4LP03901 98 aa3.36□□□□□ -1.87
VMP1-208ENST00000588617 CD2P06729 351 aa3.36□□□□□ -1.87
VMP1-208ENST00000588617 PSPHP78330 225 aa3.36□□□□□ -1.87
VMP1-208ENST00000588617 MORN2Q502X0 79 aa3.36□□□□□ -1.87
VMP1-208ENST00000588617 C1orf137Q5JT78 98 aa3.36□□□□□ -1.87
VMP1-208ENST00000588617 C2orf82Q6UX34 121 aa3.36□□□□□ -1.87
VMP1-208ENST00000588617 OR5A2Q8NGI9 324 aa3.36□□□□□ -1.87
VMP1-208ENST00000588617 AP1S3Q96PC3 154 aa3.36□□□□□ -1.87
VMP1-208ENST00000588617 SSC5DA1L4H1 1573 aa3.36□□□□□ -1.87
VMP1-208ENST00000588617 TPT1P13693 172 aaKnown RBP3.35□□□□□ -1.87
VMP1-208ENST00000588617 FOXA3P55318 350 aaPredicted RBP3.35□□□□□ -1.87
VMP1-208ENST00000588617 SNRPFP62306 86 aaKnown RBP3.35□□□□□ -1.87
VMP1-208ENST00000588617 TMEM14EPQ6UXP3 125 aa3.35□□□□□ -1.87
VMP1-208ENST00000588617 NAT14Q8WUY8 206 aa3.35□□□□□ -1.87
VMP1-208ENST00000588617 TCEAL4Q96EI5 215 aa3.35□□□□□ -1.87
VMP1-208ENST00000588617 OR4C12Q96R67 309 aa3.35□□□□□ -1.87
VMP1-208ENST00000588617 TP53RKQ96S44 253 aa3.35□□□□□ -1.87
VMP1-208ENST00000588617 REG4Q9BYZ8 158 aa3.35□□□□□ -1.87
VMP1-208ENST00000588617 CALML5Q9NZT1 146 aa3.35□□□□□ -1.87
VMP1-208ENST00000588617 DSPPQ9NZW4 1301 aa3.35□□□□□ -1.87
VMP1-208ENST00000588617 BAZ2BQ9UIF8 2168 aaKnown RBP3.34□□□□□ -1.87
VMP1-208ENST00000588617 ERC2-IT1O76042 136 aa3.34□□□□□ -1.87
VMP1-208ENST00000588617 KRTAP6-3Q3LI67 103 aa3.34□□□□□ -1.87
VMP1-208ENST00000588617 KRTAP5-5Q701N2 237 aaPredicted RBP3.34□□□□□ -1.87
VMP1-208ENST00000588617 SOX21Q9Y651 276 aaPredicted RBP3.34□□□□□ -1.87
VMP1-208ENST00000588617 CHCHD2Q9Y6H1 151 aaPredicted RBP3.34□□□□□ -1.87
VMP1-208ENST00000588617 COL11A1P12107 1806 aaPredicted RBP3.34□□□□□ -1.87
VMP1-208ENST00000588617 MYH8P13535 1937 aa3.34□□□□□ -1.88
VMP1-208ENST00000588617 NOTCH2Q04721 2471 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 PAPPA2Q9BXP8 1791 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 DOCK1Q14185 1865 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 BAHCC1Q9P281 2608 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 TCHHQ07283 1943 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 TRAV27A0A087WT01 109 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 TRBV6-8A0A0A6YYG3 113 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 CCDC160A6NGH7 325 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 PCNX2A6NKB5 2137 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 RNASE3P12724 160 aaKnown RBP3.33□□□□□ -1.88
VMP1-208ENST00000588617 CIRBPQ14011 172 aaKnown RBP3.33□□□□□ -1.88
VMP1-208ENST00000588617 ARPINQ7Z6K5 226 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 COPZ2Q9P299 210 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 FREM1Q5H8C1 2179 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 DOCK10Q96BY6 2186 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 A0A0G2JMZ2 1700 aa3.33□□□□□ -1.88
VMP1-208ENST00000588617 MYH6P13533 1939 aa3.32□□□□□ -1.88
VMP1-208ENST00000588617 MYH4Q9Y623 1939 aa3.32□□□□□ -1.88
VMP1-208ENST00000588617 DIDO1Q9BTC0 2240 aaKnown RBP3.32□□□□□ -1.88
VMP1-208ENST00000588617 HYPMO75409 117 aa3.32□□□□□ -1.88
VMP1-208ENST00000588617 ZNF93P35789 620 aaPredicted RBP3.32□□□□□ -1.88
VMP1-208ENST00000588617 PCOTHQ58A44 107 aa3.32□□□□□ -1.88
VMP1-208ENST00000588617 TMEM244Q5VVB8 128 aa3.32□□□□□ -1.88
VMP1-208ENST00000588617 ZNF720Q7Z2F6 126 aa3.32□□□□□ -1.88
VMP1-208ENST00000588617 OR4C6Q8NH72 309 aa3.32□□□□□ -1.88
VMP1-208ENST00000588617 LOC285556D6RIA3 1793 aa3.31□□□□□ -1.88
VMP1-208ENST00000588617 A0A087WSZ3 146 aa3.31□□□□□ -1.88
VMP1-208ENST00000588617 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.31□□□□□ -1.88
VMP1-208ENST00000588617 TEX261Q6UWH6 196 aa3.31□□□□□ -1.88
VMP1-208ENST00000588617 Q8N2B8 174 aa3.31□□□□□ -1.88
VMP1-208ENST00000588617 CCL4L1Q8NHW4 92 aa3.31□□□□□ -1.88
VMP1-208ENST00000588617 C4orf3Q8WVX3 66 aa3.31□□□□□ -1.88
VMP1-208ENST00000588617 CLEC2BQ92478 149 aa3.31□□□□□ -1.88
VMP1-208ENST00000588617 U3KQ87 197 aa3.31□□□□□ -1.88
VMP1-208ENST00000588617 PCDH15Q96QU1 1955 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms