RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 IL7P13232 177 aa-0.59□□□□□ -2.5
SS18-214ENST00000580003 KRTAP19-7Q3SYF9 63 aa-0.59□□□□□ -2.5
SS18-214ENST00000580003 MORN4Q8NDC4 146 aa-0.59□□□□□ -2.5
SS18-214ENST00000580003 FKBP11Q9NYL4 201 aa-0.59□□□□□ -2.5
SS18-214ENST00000580003 TRPM7Q96QT4 1865 aa-0.59□□□□□ -2.5
SS18-214ENST00000580003 ABCA2Q9BZC7 2435 aa-0.59□□□□□ -2.5
SS18-214ENST00000580003 TRAV12-2A0A075B6T6 113 aa-0.6□□□□□ -2.51
SS18-214ENST00000580003 IGKCP01834 107 aa-0.6□□□□□ -2.51
SS18-214ENST00000580003 IFITM1P13164 125 aa-0.6□□□□□ -2.51
SS18-214ENST00000580003 UNQ5815/PRO19632Q6UWF5 114 aa-0.6□□□□□ -2.51
SS18-214ENST00000580003 VPS25Q9BRG1 176 aa-0.6□□□□□ -2.51
SS18-214ENST00000580003 CCDC32Q9BV29 185 aa-0.6□□□□□ -2.51
SS18-214ENST00000580003 SRRM2Q9UQ35 2752 aaKnown RBP-0.6□□□□□ -2.51
SS18-214ENST00000580003 HERC2O95714 4834 aa-0.6□□□□□ -2.51
SS18-214ENST00000580003 ANK2Q01484 3957 aa-0.6□□□□□ -2.51
SS18-214ENST00000580003 LAMC3Q9Y6N6 1575 aa-0.61□□□□□ -2.51
SS18-214ENST00000580003 SPAG17Q6Q759 2223 aa-0.61□□□□□ -2.51
SS18-214ENST00000580003 C9JAW5 83 aa-0.61□□□□□ -2.51
SS18-214ENST00000580003 H3BMG7 143 aa-0.61□□□□□ -2.51
SS18-214ENST00000580003 FAM107AO95990 144 aa-0.61□□□□□ -2.51
SS18-214ENST00000580003 SLC25A4P12235 298 aa-0.61□□□□□ -2.51
SS18-214ENST00000580003 SERPINB1P30740 379 aa-0.61□□□□□ -2.51
SS18-214ENST00000580003 S100A11P31949 105 aa-0.61□□□□□ -2.51
SS18-214ENST00000580003 BLCAPP62952 87 aa-0.61□□□□□ -2.51
SS18-214ENST00000580003 BOLA2Q9H3K6 86 aa-0.61□□□□□ -2.51
SS18-214ENST00000580003 F8P00451 2351 aa-0.61□□□□□ -2.51
SS18-214ENST00000580003 SOGA1O94964 1423 aa-0.62□□□□□ -2.51
SS18-214ENST00000580003 TRBV10-1A0A0K0K1A3 114 aa-0.62□□□□□ -2.51
SS18-214ENST00000580003 PPP5D1E7EU14 171 aa-0.62□□□□□ -2.51
SS18-214ENST00000580003 CDC42EP2O14613 210 aa-0.62□□□□□ -2.51
SS18-214ENST00000580003 MRPS15P82914 257 aaKnown RBP-0.62□□□□□ -2.51
SS18-214ENST00000580003 IQCJQ1A5X6 159 aa-0.62□□□□□ -2.51
SS18-214ENST00000580003 DCUN1D2Q6PH85 259 aa-0.62□□□□□ -2.51
SS18-214ENST00000580003 OR51A4Q8NGJ6 313 aa-0.62□□□□□ -2.51
SS18-214ENST00000580003 BPESC1Q9GZL8 116 aa-0.62□□□□□ -2.51
SS18-214ENST00000580003 BET1LQ9NYM9 111 aa-0.62□□□□□ -2.51
SS18-214ENST00000580003 ZCCHC6Q5VYS8 1495 aaKnown RBP-0.62□□□□□ -2.51
SS18-214ENST00000580003 MYO7AQ13402 2215 aa-0.62□□□□□ -2.51
SS18-214ENST00000580003 KIAA1109Q2LD37 5005 aa-0.63□□□□□ -2.51
SS18-214ENST00000580003 TRBV7-6A0A0J9YX20 115 aa-0.63□□□□□ -2.51
SS18-214ENST00000580003 MAP1LC3B2A6NCE7 125 aa-0.63□□□□□ -2.51
SS18-214ENST00000580003 CKS2P33552 79 aa-0.63□□□□□ -2.51
SS18-214ENST00000580003 C3orf33Q6P1S2 294 aa-0.63□□□□□ -2.51
SS18-214ENST00000580003 TMEM141Q96I45 108 aa-0.63□□□□□ -2.51
SS18-214ENST00000580003 CPDO75976 1380 aa-0.63□□□□□ -2.51
SS18-214ENST00000580003 NINQ8N4C6 2090 aa-0.63□□□□□ -2.51
SS18-214ENST00000580003 CDK13Q14004 1512 aaKnown RBP-0.64□□□□□ -2.51
SS18-214ENST00000580003 RYR3Q15413 4870 aa-0.64□□□□□ -2.51
SS18-214ENST00000580003 ZCCHC11Q5TAX3 1644 aaKnown RBP-0.64□□□□□ -2.51
SS18-214ENST00000580003 MYH2Q9UKX2 1941 aa-0.64□□□□□ -2.51
SS18-214ENST00000580003 UBR4Q5T4S7 5183 aa-0.64□□□□□ -2.51
SS18-214ENST00000580003 WNK2Q9Y3S1 2297 aa-0.64□□□□□ -2.51
SS18-214ENST00000580003 PNMA8CA0A1B0GUJ8 204 aa-0.64□□□□□ -2.51
SS18-214ENST00000580003 H7BYZ3 331 aa-0.64□□□□□ -2.51
SS18-214ENST00000580003 POLR2JP52435 117 aaKnown RBP-0.64□□□□□ -2.51
SS18-214ENST00000580003 SIPA1L2Q9P2F8 1722 aaPredicted RBP-0.64□□□□□ -2.51
SS18-214ENST00000580003 FAT1Q14517 4588 aa-0.65□□□□□ -2.51
SS18-214ENST00000580003 RREB1Q92766 1687 aa-0.65□□□□□ -2.51
SS18-214ENST00000580003 PYYP10082 97 aa-0.65□□□□□ -2.51
SS18-214ENST00000580003 CRYGSP22914 178 aa-0.65□□□□□ -2.51
SS18-214ENST00000580003 MT4P47944 62 aa-0.65□□□□□ -2.51
SS18-214ENST00000580003 TEX29Q8N6K0 151 aa-0.65□□□□□ -2.51
SS18-214ENST00000580003 OR5A2Q8NGI9 324 aa-0.65□□□□□ -2.51
SS18-214ENST00000580003 NAT14Q8WUY8 206 aa-0.65□□□□□ -2.51
SS18-214ENST00000580003 ANKRD31Q8N7Z5 1873 aa-0.65□□□□□ -2.51
SS18-214ENST00000580003 CACNA1AO00555 2505 aa-0.66□□□□□ -2.51
SS18-214ENST00000580003 ROCK1Q13464 1354 aa-0.66□□□□□ -2.51
SS18-214ENST00000580003 IGHV1-24A0A0C4DH33 117 aa-0.66□□□□□ -2.52
SS18-214ENST00000580003 OR4S1Q8NGB4 309 aa-0.66□□□□□ -2.52
SS18-214ENST00000580003 DLEC1Q9Y238 1755 aa-0.66□□□□□ -2.52
SS18-214ENST00000580003 FAM135BQ49AJ0 1406 aa-0.66□□□□□ -2.52
SS18-214ENST00000580003 RYR1P21817 5038 aa-0.66□□□□□ -2.52
SS18-214ENST00000580003 MAP2P11137 1827 aaKnown RBP-0.66□□□□□ -2.52
SS18-214ENST00000580003 E7EQ34 232 aa-0.67□□□□□ -2.52
SS18-214ENST00000580003 OR2H2O95918 312 aa-0.67□□□□□ -2.52
SS18-214ENST00000580003 HBDP02042 147 aa-0.67□□□□□ -2.52
SS18-214ENST00000580003 ADCYAP1P18509 176 aa-0.67□□□□□ -2.52
SS18-214ENST00000580003 BASP1P80723 227 aaKnown RBP-0.67□□□□□ -2.52
SS18-214ENST00000580003 PPDPFLQ8WWR9 84 aa-0.67□□□□□ -2.52
SS18-214ENST00000580003 AHCTF1Q8WYP5 2266 aa-0.67□□□□□ -2.52
SS18-214ENST00000580003 HYDINQ4G0P3 5121 aa-0.67□□□□□ -2.52
SS18-214ENST00000580003 TRIQKQ629K1 86 aa-0.68□□□□□ -2.52
SS18-214ENST00000580003 STX12Q86Y82 276 aa-0.68□□□□□ -2.52
SS18-214ENST00000580003 ABCA4P78363 2273 aa-0.68□□□□□ -2.52
SS18-214ENST00000580003 SYNMO15061 1565 aa-0.69□□□□□ -2.52
SS18-214ENST00000580003 PTPRGP23470 1445 aa-0.69□□□□□ -2.52
SS18-214ENST00000580003 ZNF670-ZNF695F2Z2N8 137 aa-0.69□□□□□ -2.52
SS18-214ENST00000580003 EMX2Q04743 252 aa-0.69□□□□□ -2.52
SS18-214ENST00000580003 KRTAP19-8Q3LI54 63 aa-0.69□□□□□ -2.52
SS18-214ENST00000580003 TMEM78Q5T7P6 136 aa-0.69□□□□□ -2.52
SS18-214ENST00000580003 OTOSQ8NHW6 89 aa-0.69□□□□□ -2.52
SS18-214ENST00000580003 ATPIF1Q9UII2 106 aa-0.69□□□□□ -2.52
SS18-214ENST00000580003 MED31Q9Y3C7 131 aa-0.69□□□□□ -2.52
SS18-214ENST00000580003 LAMA5O15230 3695 aa-0.69□□□□□ -2.52
SS18-214ENST00000580003 TANC2Q9HCD6 1990 aa-0.69□□□□□ -2.52
SS18-214ENST00000580003 A2MP01023 1474 aa-0.69□□□□□ -2.52
SS18-214ENST00000580003 NUP210Q8TEM1 1887 aaPredicted RBP-0.69□□□□□ -2.52
SS18-214ENST00000580003 ABCA1O95477 2261 aa-0.69□□□□□ -2.52
SS18-214ENST00000580003 PDZD2O15018 2839 aa-0.7□□□□□ -2.52
SS18-214ENST00000580003 RNF213Q63HN8 5207 aa-0.7□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms