RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TSC22D3Q99576 134 aa3.47□□□□□ -1.85
VPS53-219ENST00000576019 PCTPQ9UKL6 214 aa3.47□□□□□ -1.85
VPS53-219ENST00000576019 ZNF443Q9Y2A4 671 aaPredicted RBP3.47□□□□□ -1.85
VPS53-219ENST00000576019 SYNE2Q8WXH0 6885 aaKnown RBP3.46□□□□□ -1.85
VPS53-219ENST00000576019 IGHV3-73A0A0B4J1V6 119 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 PVALEFA0A1B0GWK0 134 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 DUXBA0A1W2PPF3 345 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 TCRBV4S1A1TA0A5B7 111 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 C1orf196B1AJZ1 125 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 ZNF73O43830 326 aaPredicted RBP3.46□□□□□ -1.86
VPS53-219ENST00000576019 IFNA10P01566 189 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 APOA2P02652 100 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 HLA-DMBP28068 263 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 CASP1P29466 404 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 RBM11P57052 281 aaKnown RBP3.46□□□□□ -1.86
VPS53-219ENST00000576019 CDC42P60953 191 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 MEF2BQ02080 365 aaPredicted RBP3.46□□□□□ -1.86
VPS53-219ENST00000576019 LCE1FQ5T754 118 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 C3orf62Q6ZUJ4 267 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 OR52R1Q8NGF1 315 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 CCDC115Q96NT0 180 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 IMUPQ9GZP8 106 aa3.46□□□□□ -1.86
VPS53-219ENST00000576019 IGHV3OR16-8A0A075B7F1 116 aa3.45□□□□□ -1.86
VPS53-219ENST00000576019 LOC102725191A0A1B0GVB3 256 aa3.45□□□□□ -1.86
VPS53-219ENST00000576019 C17orf51A8MQB3 221 aa3.45□□□□□ -1.86
VPS53-219ENST00000576019 F8W036 122 aa3.45□□□□□ -1.86
VPS53-219ENST00000576019 RPL7P18124 248 aaKnown RBP3.45□□□□□ -1.86
VPS53-219ENST00000576019 LPAR6P43657 344 aa3.45□□□□□ -1.86
VPS53-219ENST00000576019 FXYD7P58549 80 aa3.45□□□□□ -1.86
VPS53-219ENST00000576019 RPS11P62280 158 aaKnown RBP eCLIP3.45□□□□□ -1.86
VPS53-219ENST00000576019 NOXRED1Q6NXP6 359 aa3.45□□□□□ -1.86
VPS53-219ENST00000576019 LCA10Q71F78 164 aa3.45□□□□□ -1.86
VPS53-219ENST00000576019 LRRC18Q8N456 261 aa3.45□□□□□ -1.86
VPS53-219ENST00000576019 MND1Q9BWT6 205 aa3.45□□□□□ -1.86
VPS53-219ENST00000576019 SMDT1Q9H4I9 107 aa3.45□□□□□ -1.86
VPS53-219ENST00000576019 SPANXA1Q9NS26 97 aa3.45□□□□□ -1.86
VPS53-219ENST00000576019 JPT1Q9UK76 154 aa3.45□□□□□ -1.86
VPS53-219ENST00000576019 BUB1B-PAK6H3BSN5 160 aa3.44□□□□□ -1.86
VPS53-219ENST00000576019 BLVRBP30043 206 aaPredicted RBP3.44□□□□□ -1.86
VPS53-219ENST00000576019 RPL18Q07020 188 aaKnown RBP3.44□□□□□ -1.86
VPS53-219ENST00000576019 RPL13AP3Q6NVV1 102 aa3.44□□□□□ -1.86
VPS53-219ENST00000576019 BPIFA4PQ86YQ2 179 aa3.44□□□□□ -1.86
VPS53-219ENST00000576019 OR9Q1Q8NGQ5 310 aa3.44□□□□□ -1.86
VPS53-219ENST00000576019 THEM6Q8WUY1 208 aa3.44□□□□□ -1.86
VPS53-219ENST00000576019 HSPB9Q9BQS6 159 aa3.44□□□□□ -1.86
VPS53-219ENST00000576019 C2orf88Q9BSF0 95 aa3.44□□□□□ -1.86
VPS53-219ENST00000576019 LPAP08519 4548 aa3.44□□□□□ -1.86
VPS53-219ENST00000576019 GRIFINA4D1Z8 144 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 C17orf98A8MV24 154 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 K7EP13 123 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 CLPSP04118 112 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 ZNF14P17017 642 aaPredicted RBP3.43□□□□□ -1.86
VPS53-219ENST00000576019 CD200P41217 278 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 CCL8P80075 99 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 Q6P435 159 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 ZNF705AQ6ZN79 300 aaPredicted RBP3.43□□□□□ -1.86
VPS53-219ENST00000576019 KTN1-AS1Q86SY8 53 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 DNAJC9Q8WXX5 260 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 CARD19Q96LW7 228 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 PFDN5Q99471 154 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 SNRNP25Q9BV90 132 aaKnown RBP3.43□□□□□ -1.86
VPS53-219ENST00000576019 OR2J1Q9GZK6 312 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 RASL12Q9NYN1 266 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 NEBP20929 6669 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 TNCP24821 2201 aa3.43□□□□□ -1.86
VPS53-219ENST00000576019 TANC2Q9HCD6 1990 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 TRAV38-1A0A0B4J264 116 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 A0A1B0GV90 55 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 LOC285095A0A1B0GVY8 99 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 FABP5P3A8MUU1 101 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 CYB5BO43169 146 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 OGNP20774 298 aaKnown RBP3.42□□□□□ -1.86
VPS53-219ENST00000576019 S100A4P26447 101 aaKnown RBP3.42□□□□□ -1.86
VPS53-219ENST00000576019 AKR1C3P42330 323 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 CKS1BP61024 79 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 KISS1Q15726 138 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 TMEM155Q4W5P6 130 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 C2orf91Q6ZV80 131 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 Q8N9L7 120 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 NUP35Q8NFH5 326 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 OR10P1Q8NGE3 313 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 OR8J3Q8NGG0 315 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 STAG3L4Q8TBR4 150 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 SLC39A9Q9NUM3 307 aa3.42□□□□□ -1.86
VPS53-219ENST00000576019 A0A087WX48 190 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 A0A0J9YW62 118 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 COLCA2A8K830 154 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 H3BUX3 64 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 M0R2N4 97 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 TAX1BP3O14907 124 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 DEGS1O15121 323 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 KRTAP1-4P0C5Y4 121 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 NFYBP25208 207 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 INSL3P51460 131 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 AKR1C1Q04828 323 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 WHAMMP3Q1A5X7 153 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 RRN3P1Q2M238 152 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 KRTAP25-1Q3LHN0 102 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 LYPD6Q86Y78 171 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 OR4D11Q8NGI4 311 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms