RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 HMGN2P05204 90 aaKnown RBP2.42□□□□□ -2.02
VPS35-208ENST00000568612 LGALS3P17931 250 aaKnown RBP2.42□□□□□ -2.02
VPS35-208ENST00000568612 FCER1GP30273 86 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 IFI27P40305 119 aaPredicted RBP2.42□□□□□ -2.02
VPS35-208ENST00000568612 LINC01547P58512 204 aaPredicted RBP2.42□□□□□ -2.02
VPS35-208ENST00000568612 PAX8Q06710 450 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 SS18Q15532 418 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 KISS1Q15726 138 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 PLPP4Q5VZY2 271 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 MIC13Q5XKP0 118 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 Q6JHZ5 121 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 UNQ9165/PRO28630Q6UXU0 137 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 SCGB1D4Q6XE38 83 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 ZNF497Q6ZNH5 498 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 Q8N8P6 123 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 NT5CQ8TCD5 201 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 DCANP1Q8TF63 244 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 VSIG2Q96IQ7 327 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 NABP2Q9BQ15 211 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 TTTY13Q9BZ97 58 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 RPP21Q9H633 154 aaKnown RBP2.42□□□□□ -2.02
VPS35-208ENST00000568612 MOB4Q9Y3A3 225 aa2.42□□□□□ -2.02
VPS35-208ENST00000568612 AGRNO00468 2067 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 EML6Q6ZMW3 1958 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 RALGAPA1Q6GYQ0 2036 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 COL5A1P20908 1838 aaPredicted RBP2.41□□□□□ -2.02
VPS35-208ENST00000568612 TNRC6BQ9UPQ9 1833 aaKnown RBP2.41□□□□□ -2.02
VPS35-208ENST00000568612 A0A0B4J2C4 111 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 A0A1W2PQD3 144 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 LINC01546A6NGU7 62 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 PMS2P5A8MQ11 134 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 IBA57-AS1B1ANH7 110 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 H7BZZ5 65 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 K7EMT4 169 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 NDUFB3O43676 98 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 NDUFS5O43920 106 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 PLNP26678 52 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 CRIP2P52943 208 aaPredicted RBP2.41□□□□□ -2.02
VPS35-208ENST00000568612 DAD1P61803 113 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 ECSCRQ19T08 205 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 MRGPRG-AS1Q2M3A8 158 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 ZNF542PQ5EBM4 170 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 SPANXN5Q5MJ07 72 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 C2orf82Q6UX34 121 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 Q6ZVQ6 151 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 WDR86Q86TI4 376 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 Q8N2B8 174 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 DAND5Q8N907 189 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 TMEM75Q8N9X5 138 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 PGLYRP4Q96LB8 373 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 SLC50A1Q9BRV3 221 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 PROK2Q9HC23 129 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 ZNF355PQ9NSJ1 428 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 U3KQK5 164 aa2.41□□□□□ -2.02
VPS35-208ENST00000568612 MYO9BQ13459 2157 aa2.4□□□□□ -2.02
VPS35-208ENST00000568612 IGLV3-16A0A075B6K0 115 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 IGLV3-10A0A075B6K4 115 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 IGLV5-45A0A087WSX0 123 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 TRBV27A0A0K0K1C4 114 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 LYRM9A8MSI8 78 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 IQCF6A8MYZ5 107 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 NDUFC1O43677 76 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 BCE1O60756 84 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 SNRNP200O75643 2136 aaKnown RBP2.4□□□□□ -2.03
VPS35-208ENST00000568612 CCKP06307 115 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 FREM3P0C091 2139 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 DEFA4P12838 97 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 ZNF22P17026 224 aaPredicted RBP2.4□□□□□ -2.03
VPS35-208ENST00000568612 ZNF138P52744 262 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 SUB1P53999 127 aaKnown RBP eCLIP2.4□□□□□ -2.03
VPS35-208ENST00000568612 KLKP1Q107X0 134 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 NSUN5P1Q3KNT7 163 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 ZNF818PQ6ZRF7 136 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 FAM223AQ8IWN6 122 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 C6orf223Q8N319 242 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 MAPKAPK5-AS1Q8N8E1 139 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 THAP8Q8NA92 274 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 ZNF714Q96N38 554 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 DEFB127Q9H1M4 99 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 CXXC4Q9H2H0 198 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 C11orf68Q9H3H3 251 aaKnown RBP2.4□□□□□ -2.03
VPS35-208ENST00000568612 TAC3Q9UHF0 121 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 PRO1854Q9UHT4 67 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 TIMM8BQ9Y5J9 83 aaPredicted RBP2.4□□□□□ -2.03
VPS35-208ENST00000568612 COL4A6Q14031 1691 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 CEP192Q8TEP8 1941 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 TANC2Q9HCD6 1990 aa2.4□□□□□ -2.03
VPS35-208ENST00000568612 IGLV1-36A0A0B4J1U3 117 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 TRAV3A0A0B4J244 114 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 TRBV30A0A0K0K1B3 111 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 LOC101059948A0A1B0GTJ6 334 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 RBMY1BA6NDE4 496 aaKnown RBP2.39□□□□□ -2.03
VPS35-208ENST00000568612 RBMY1EA6NEQ0 496 aaKnown RBP2.39□□□□□ -2.03
VPS35-208ENST00000568612 FAM223BA6NKX1 122 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 J3QT63 122 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 ZNF73O43830 326 aaPredicted RBP2.39□□□□□ -2.03
VPS35-208ENST00000568612 WISP2O76076 250 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 IGHV3-33P01772 117 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 IGHV4-39P01824 125 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 RBMY1DP0C7P1 496 aaKnown RBP2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms