RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 ODF3L1Q8IXM7 274 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 ADARB2-AS1A8MUL3 147 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 USP17L23D6RBM5 183 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 ARTNQ5T4W7 220 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 GDF5OSQ5U4N7 250 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 Q6JHZ5 121 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 C20orf197Q8N268 126 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 PCNX2A6NKB5 2137 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 TRBV7-1A0A0A6YYK4 115 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 CCL11P51671 97 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 BLCAPP62952 87 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 MIAQ16674 131 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 KHDC1LQ5JSQ8 128 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 UPK3BQ9BT76 320 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 C5orf63A6NC05 138 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 ZFP2Q6ZN57 461 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 NXPH4O95158 308 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 SPRY4Q9C004 299 aa4.93□□□□□ -1.62
CLK3-212ENST00000563418 MRPS12O15235 138 aaKnown RBP4.92□□□□□ -1.62
CLK3-212ENST00000563418 FUSP35637 526 aaKnown RBP eCLIP4.92□□□□□ -1.62
CLK3-212ENST00000563418 ZNF407Q9C0G0 2248 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 TNRC6BQ9UPQ9 1833 aaKnown RBP4.92□□□□□ -1.62
CLK3-212ENST00000563418 TRBV7-3A0A075B6L6 115 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 AGRNO00468 2067 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 TMEM256-PLSCR3K7ERE1 68 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 WFDC11Q8NEX6 87 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 TTTY13Q9BZ97 58 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 TRAV26-2A0A0B4J265 109 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 IGKV3-7A0A075B6H7 116 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 IGKV3-15P01624 115 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 IGHV3-33P01772 117 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 RSPO4Q2I0M5 234 aaPredicted RBP4.92□□□□□ -1.62
CLK3-212ENST00000563418 CD177Q8N6Q3 437 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 PCNX3Q9H6A9 2034 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 MED14OSP0DP75 135 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 NEXN-AS1Q8NBZ9 246 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 EFNA2O43921 213 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 IGKV1-16P04430 117 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 NBL1P41271 181 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 SDK2Q58EX2 2172 aa4.92□□□□□ -1.62
CLK3-212ENST00000563418 IGKV3D-20A0A0C4DH25 116 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 FAM216BQ8N7L0 139 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 CLEC2BQ92478 149 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 LST1O00453 97 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 AHCTF1Q8WYP5 2266 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 IGHV3-30P01768 117 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 IGHV3-30-5P0DP03 117 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 SDIM1Q6ZPB5 146 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 IGHV1OR15-9A0A0B4J2B8 117 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 UBE2BP63146 152 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 A0A0U1RRA0 63 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 RETNQ9HD89 108 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 SRRM4A7MD48 611 aaKnown RBP4.91□□□□□ -1.62
CLK3-212ENST00000563418 C16orf97H3BN30 126 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 ZNF295-AS1Q8N0V1 137 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 A0A0J9YY99 117 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 C15orf65H3BRN8 121 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 MP68P56378 58 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 ARFGEF3Q5TH69 2177 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 VPREB1P12018 145 aa4.91□□□□□ -1.62
CLK3-212ENST00000563418 THSD7BQ9C0I4 1608 aa4.9□□□□□ -1.62
CLK3-212ENST00000563418 PRR19A6NJB7 356 aa4.9□□□□□ -1.62
CLK3-212ENST00000563418 DAZ2Q13117 558 aaKnown RBP4.9□□□□□ -1.62
CLK3-212ENST00000563418 KRTAP27-1Q3LI81 207 aa4.9□□□□□ -1.62
CLK3-212ENST00000563418 DAZ4Q86SG3 579 aaKnown RBP4.9□□□□□ -1.62
CLK3-212ENST00000563418 KLHL30-AS1Q8NEE0 82 aa4.9□□□□□ -1.62
CLK3-212ENST00000563418 CFHR4Q92496 578 aa4.9□□□□□ -1.62
CLK3-212ENST00000563418 DAZ1Q9NQZ3 744 aaKnown RBP4.9□□□□□ -1.62
CLK3-212ENST00000563418 DAZ3Q9NR90 486 aaKnown RBP4.9□□□□□ -1.62
CLK3-212ENST00000563418 J3QLI3 93 aa4.9□□□□□ -1.62
CLK3-212ENST00000563418 DIAPH2-AS1Q14236 149 aa4.9□□□□□ -1.62
CLK3-212ENST00000563418 TRIAP1O43715 76 aa4.9□□□□□ -1.62
CLK3-212ENST00000563418 PMAIP1Q13794 54 aa4.9□□□□□ -1.62
CLK3-212ENST00000563418 RPL36AP83881 106 aaKnown RBP4.9□□□□□ -1.62
CLK3-212ENST00000563418 PAX8Q06710 450 aa4.9□□□□□ -1.62
CLK3-212ENST00000563418 RPL36ALQ969Q0 106 aaKnown RBP4.9□□□□□ -1.62
CLK3-212ENST00000563418 IGKV2D-26A0A0A0MRZ7 120 aa4.9□□□□□ -1.63
CLK3-212ENST00000563418 CLEC19AQ6UXS0 136 aa4.9□□□□□ -1.63
CLK3-212ENST00000563418 GGNQ86UU5 652 aa4.9□□□□□ -1.63
CLK3-212ENST00000563418 WT1-ASQ06250 92 aa4.9□□□□□ -1.63
CLK3-212ENST00000563418 LINC00311Q8N616 119 aa4.9□□□□□ -1.63
CLK3-212ENST00000563418 TRGV3P03979 118 aa4.9□□□□□ -1.63
CLK3-212ENST00000563418 NFE4Q86UQ8 179 aa4.9□□□□□ -1.63
CLK3-212ENST00000563418 FAM222AQ5U5X8 452 aa4.9□□□□□ -1.63
CLK3-212ENST00000563418 KIR2DL5BQ8NHK3 375 aa4.9□□□□□ -1.63
CLK3-212ENST00000563418 TMEM61Q8N0U2 210 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 A0A0J9YX75 114 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 UBE2D1P51668 147 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 C10orf55Q5SWW7 151 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 DOPEY2Q9Y3R5 2298 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 C15orf32Q32M92 178 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 C1orf210Q8IVY1 113 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 ZMAT4Q9H898 229 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 MRPL36Q9P0J6 103 aaKnown RBP4.89□□□□□ -1.63
CLK3-212ENST00000563418 FAM223BA6NKX1 122 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 KLK10O43240 276 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 TRBV12-3P01733 135 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 UBE2AP49459 152 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 FAM223AQ8IWN6 122 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 MBD3L2Q8NHZ7 208 aaPredicted RBP4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms