RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 WFDC12Q8WWY7 111 aa9.81□□□□□ -0.84
LDLR-207ENST00000558013 M0R381 172 aa9.8□□□□□ -0.84
LDLR-207ENST00000558013 SMIM17P0DL12 118 aa9.8□□□□□ -0.84
LDLR-207ENST00000558013 SRSF2Q01130 221 aaKnown RBP9.8□□□□□ -0.84
LDLR-207ENST00000558013 ACACBO00763 2458 aa9.8□□□□□ -0.84
LDLR-207ENST00000558013 RAB9AP51151 201 aa9.8□□□□□ -0.84
LDLR-207ENST00000558013 OR1N2Q8NGR9 330 aa9.8□□□□□ -0.84
LDLR-207ENST00000558013 TMEM160Q9NX00 188 aa9.8□□□□□ -0.84
LDLR-207ENST00000558013 C9orf47Q6ZRZ4 202 aa9.8□□□□□ -0.84
LDLR-207ENST00000558013 CST9LQ9H4G1 147 aa9.8□□□□□ -0.84
LDLR-207ENST00000558013 NXT2Q9NPJ8 142 aaKnown RBP9.8□□□□□ -0.84
LDLR-207ENST00000558013 FAM208BQ5VWN6 2430 aa9.79□□□□□ -0.84
LDLR-207ENST00000558013 GAGE12BA1L429 117 aa9.79□□□□□ -0.84
LDLR-207ENST00000558013 TMEM8BA6NDV4 472 aa9.79□□□□□ -0.84
LDLR-207ENST00000558013 KLK9Q2XQG4 91 aa9.79□□□□□ -0.84
LDLR-207ENST00000558013 KLK9Q9UKQ9 250 aa9.79□□□□□ -0.84
LDLR-207ENST00000558013 FBN2P35556 2912 aa9.79□□□□□ -0.84
LDLR-207ENST00000558013 MRPL35Q9NZE8 188 aaKnown RBP9.79□□□□□ -0.84
LDLR-207ENST00000558013 PEF1Q9UBV8 284 aaKnown RBP9.79□□□□□ -0.84
LDLR-207ENST00000558013 MOB4Q9Y3A3 225 aa9.79□□□□□ -0.84
LDLR-207ENST00000558013 DOPEY1Q5JWR5 2465 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 C19orf54Q5BKX5 351 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 ZC2HC1BQ5TFG8 222 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 Q8N8P6 123 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 DPF1Q92782 380 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 SPOCK3Q9BQ16 436 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 LRRK2Q5S007 2527 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 IGHV1-69DA0A0B4J2H0 117 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 IGHV1-69P01742 117 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 SEC11AP67812 179 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 LINC01546A6NGU7 62 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 K7ERJ3 54 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 S100A7P31151 101 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 FXYD2P54710 66 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 ZFAND2AQ8N6M9 145 aa9.78□□□□□ -0.84
LDLR-207ENST00000558013 C14orf178Q8N769 122 aaPredicted RBP9.78□□□□□ -0.84
LDLR-207ENST00000558013 H3BUX3 64 aa9.77□□□□□ -0.85
LDLR-207ENST00000558013 GNRH2O43555 120 aa9.77□□□□□ -0.85
LDLR-207ENST00000558013 RPL39LQ96EH5 51 aaKnown RBP9.77□□□□□ -0.85
LDLR-207ENST00000558013 ZMAT4Q9H898 229 aa9.77□□□□□ -0.85
LDLR-207ENST00000558013 GAGE10A6NGK3 116 aa9.77□□□□□ -0.85
LDLR-207ENST00000558013 IGKCP01834 107 aa9.77□□□□□ -0.85
LDLR-207ENST00000558013 GCSHP23434 173 aa9.77□□□□□ -0.85
LDLR-207ENST00000558013 TMEM95Q3KNT9 176 aa9.77□□□□□ -0.85
LDLR-207ENST00000558013 MAPKAPK5-AS1Q8N8E1 139 aa9.77□□□□□ -0.85
LDLR-207ENST00000558013 SAP30O75446 220 aa9.76□□□□□ -0.85
LDLR-207ENST00000558013 PF4V1P10720 104 aa9.76□□□□□ -0.85
LDLR-207ENST00000558013 RNASE4P34096 147 aaKnown RBP9.76□□□□□ -0.85
LDLR-207ENST00000558013 HSD52Q0P140 79 aa9.76□□□□□ -0.85
LDLR-207ENST00000558013 OCIAD2Q56VL3 154 aa9.76□□□□□ -0.85
LDLR-207ENST00000558013 ABCA12Q86UK0 2595 aa9.76□□□□□ -0.85
LDLR-207ENST00000558013 AGRNO00468 2067 aa9.76□□□□□ -0.85
LDLR-207ENST00000558013 A0A0G2JLM5 398 aa9.76□□□□□ -0.85
LDLR-207ENST00000558013 C9orf118A6NHY6 69 aa9.76□□□□□ -0.85
LDLR-207ENST00000558013 LAGE3Q14657 143 aa9.76□□□□□ -0.85
LDLR-207ENST00000558013 NEGR1Q7Z3B1 354 aa9.76□□□□□ -0.85
LDLR-207ENST00000558013 OR9G4Q8NGQ1 327 aa9.76□□□□□ -0.85
LDLR-207ENST00000558013 NRGNQ92686 78 aa9.76□□□□□ -0.85
LDLR-207ENST00000558013 ANXA2RQ3ZCQ2 193 aa9.75□□□□□ -0.85
LDLR-207ENST00000558013 SMIM15Q7Z3B0 74 aa9.75□□□□□ -0.85
LDLR-207ENST00000558013 HIF1ANQ9NWT6 349 aa9.75□□□□□ -0.85
LDLR-207ENST00000558013 AVPP01185 164 aa9.75□□□□□ -0.85
LDLR-207ENST00000558013 MYO9AB2RTY4 2548 aa9.75□□□□□ -0.85
LDLR-207ENST00000558013 MUC4Q99102 2169 aa9.74□□□□□ -0.85
LDLR-207ENST00000558013 TRBV25-1A0A075B6N4 114 aa9.74□□□□□ -0.85
LDLR-207ENST00000558013 IGHV4-30-2A0A087WSY4 118 aa9.74□□□□□ -0.85
LDLR-207ENST00000558013 A6NDN8 102 aa9.74□□□□□ -0.85
LDLR-207ENST00000558013 SOCS3O14543 225 aa9.74□□□□□ -0.85
LDLR-207ENST00000558013 S100A4P26447 101 aaKnown RBP9.74□□□□□ -0.85
LDLR-207ENST00000558013 C10orf99Q6UWK7 81 aa9.74□□□□□ -0.85
LDLR-207ENST00000558013 TLN2Q9Y4G6 2542 aa9.74□□□□□ -0.85
LDLR-207ENST00000558013 H3BRM9 83 aa9.74□□□□□ -0.85
LDLR-207ENST00000558013 DPM2O94777 84 aa9.74□□□□□ -0.85
LDLR-207ENST00000558013 OR4X2Q8NGF9 303 aa9.74□□□□□ -0.85
LDLR-207ENST00000558013 RASL10AQ92737 203 aa9.74□□□□□ -0.85
LDLR-207ENST00000558013 FAM223BA6NKX1 122 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 CDKN1BP46527 198 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 FAM223AQ8IWN6 122 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 MRPL53Q96EL3 112 aaKnown RBP9.73□□□□□ -0.85
LDLR-207ENST00000558013 AP1S3Q96PC3 154 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 NPFFR1Q9GZQ6 430 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 JPT2Q9H910 190 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 PTPN13Q12923 2485 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 MGPP08493 103 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 UFSP1Q6NVU6 142 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 C9orf139Q6ZV77 190 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 MYOZ3Q8TDC0 251 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 CHAC1Q9BUX1 264 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 RHPN1-AS1Q9BWJ2 59 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 TEX15Q9BXT5 2789 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 OR10J6PQ8NGY7 276 aa9.73□□□□□ -0.85
LDLR-207ENST00000558013 ANKRD17O75179 2603 aaKnown RBP9.72□□□□□ -0.85
LDLR-207ENST00000558013 IGHV4-4A0A075B6R2 117 aa9.72□□□□□ -0.85
LDLR-207ENST00000558013 SIVA1O15304 175 aa9.72□□□□□ -0.85
LDLR-207ENST00000558013 SRSF1Q07955 248 aaKnown RBP eCLIP9.72□□□□□ -0.852e-6■■□□□ 14.5
LDLR-207ENST00000558013 SMIM2Q9BVW6 85 aa9.72□□□□□ -0.85
LDLR-207ENST00000558013 PHLDA3Q9Y5J5 127 aa9.72□□□□□ -0.85
LDLR-207ENST00000558013 NDUFA4O00483 81 aa9.71□□□□□ -0.85
LDLR-207ENST00000558013 VPS25Q9BRG1 176 aa9.71□□□□□ -0.85
LDLR-207ENST00000558013 NIPBLQ6KC79 2804 aaeCLIP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms