RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 CTTNBP2Q8WZ74 1663 aa1.39□□□□□ -2.19
SCFD1-209ENST00000553280 TMEM30CPA0ZSE6 113 aa1.38□□□□□ -2.19
SCFD1-209ENST00000553280 RBP4P02753 201 aa1.38□□□□□ -2.19
SCFD1-209ENST00000553280 TSPAN19P0C672 248 aa1.38□□□□□ -2.19
SCFD1-209ENST00000553280 RHOHQ15669 191 aa1.38□□□□□ -2.19
SCFD1-209ENST00000553280 Q8N6K4 173 aa1.38□□□□□ -2.19
SCFD1-209ENST00000553280 DISP2A7MBM2 1401 aa1.38□□□□□ -2.19
SCFD1-209ENST00000553280 SYNJ1O43426 1573 aa1.38□□□□□ -2.19
SCFD1-209ENST00000553280 UHRF1BP1LA0JNW5 1464 aa1.37□□□□□ -2.19
SCFD1-209ENST00000553280 YPEL1O60688 119 aa1.37□□□□□ -2.19
SCFD1-209ENST00000553280 CLLU1Q5K131 121 aa1.37□□□□□ -2.19
SCFD1-209ENST00000553280 LYPD5Q6UWN5 251 aa1.37□□□□□ -2.19
SCFD1-209ENST00000553280 PRG4Q92954 1404 aaPredicted RBP1.37□□□□□ -2.19
SCFD1-209ENST00000553280 TPST1O60507 370 aa1.36□□□□□ -2.19
SCFD1-209ENST00000553280 IGKCP01834 107 aa1.36□□□□□ -2.19
SCFD1-209ENST00000553280 IGLC6P0CF74 106 aa1.36□□□□□ -2.19
SCFD1-209ENST00000553280 ANK1P16157 1881 aa1.36□□□□□ -2.19
SCFD1-209ENST00000553280 NCS1P62166 190 aa1.36□□□□□ -2.19
SCFD1-209ENST00000553280 Q6ZQY7 126 aa1.36□□□□□ -2.19
SCFD1-209ENST00000553280 ATP6V0E2Q8NHE4 81 aa1.36□□□□□ -2.19
SCFD1-209ENST00000553280 DMAC1Q96GE9 116 aa1.36□□□□□ -2.19
SCFD1-209ENST00000553280 TAS2R8Q9NYW2 309 aa1.36□□□□□ -2.19
SCFD1-209ENST00000553280 MRPL35Q9NZE8 188 aaKnown RBP1.36□□□□□ -2.19
SCFD1-209ENST00000553280 LSM2Q9Y333 95 aaKnown RBP1.36□□□□□ -2.19
SCFD1-209ENST00000553280 PTPRDP23468 1912 aa1.36□□□□□ -2.19
SCFD1-209ENST00000553280 CNTRLQ7Z7A1 2325 aa1.35□□□□□ -2.19
SCFD1-209ENST00000553280 CHD3Q12873 2000 aaKnown RBP1.35□□□□□ -2.19
SCFD1-209ENST00000553280 KIDINS220Q9ULH0 1771 aa1.35□□□□□ -2.19
SCFD1-209ENST00000553280 A0A0G2JMM0 328 aa1.35□□□□□ -2.19
SCFD1-209ENST00000553280 A0A1W2PPM0 123 aa1.35□□□□□ -2.19
SCFD1-209ENST00000553280 M0R2Z0 102 aa1.35□□□□□ -2.19
SCFD1-209ENST00000553280 IL7P13232 177 aa1.35□□□□□ -2.19
SCFD1-209ENST00000553280 MRPL36Q9P0J6 103 aaKnown RBP1.35□□□□□ -2.19
SCFD1-209ENST00000553280 NCR2O95944 276 aa1.34□□□□□ -2.19
SCFD1-209ENST00000553280 COX4I1P13073 169 aa1.34□□□□□ -2.19
SCFD1-209ENST00000553280 SLC25A26Q70HW3 274 aa1.34□□□□□ -2.19
SCFD1-209ENST00000553280 DEFB132Q7Z7B7 95 aa1.34□□□□□ -2.19
SCFD1-209ENST00000553280 SNX29P2Q8IUI4 249 aa1.34□□□□□ -2.19
SCFD1-209ENST00000553280 CCDC171Q6TFL3 1326 aa1.34□□□□□ -2.2
SCFD1-209ENST00000553280 LRP5O75197 1615 aa1.33□□□□□ -2.2
SCFD1-209ENST00000553280 MYH1P12882 1939 aa1.33□□□□□ -2.2
SCFD1-209ENST00000553280 TRAV2A0A0B4J234 112 aa1.33□□□□□ -2.2
SCFD1-209ENST00000553280 TRBV30A0A0K0K1B3 111 aa1.33□□□□□ -2.2
SCFD1-209ENST00000553280 FAM236AA0A1B0GUQ0 79 aa1.33□□□□□ -2.2
SCFD1-209ENST00000553280 FAM236BA0A1B0GV22 79 aa1.33□□□□□ -2.2
SCFD1-209ENST00000553280 J3QR89 54 aa1.33□□□□□ -2.2
SCFD1-209ENST00000553280 M0R2P5 195 aa1.33□□□□□ -2.2
SCFD1-209ENST00000553280 POLR2JP52435 117 aaKnown RBP1.33□□□□□ -2.2
SCFD1-209ENST00000553280 XAF1Q6GPH4 301 aa1.33□□□□□ -2.2
SCFD1-209ENST00000553280 UNQ5815/PRO19632Q6UWF5 114 aa1.33□□□□□ -2.2
SCFD1-209ENST00000553280 CTAGE3PQ8IX95 158 aa1.33□□□□□ -2.2
SCFD1-209ENST00000553280 CCL19Q99731 98 aa1.33□□□□□ -2.2
SCFD1-209ENST00000553280 NOP16Q9Y3C1 178 aaKnown RBP1.33□□□□□ -2.2
SCFD1-209ENST00000553280 ASCC3Q8N3C0 2202 aaKnown RBP1.33□□□□□ -2.2
SCFD1-209ENST00000553280 CDK12Q9NYV4 1490 aaPredicted RBP1.32□□□□□ -2.2
SCFD1-209ENST00000553280 TRBV20-1A0A075B6N2 111 aa1.32□□□□□ -2.2
SCFD1-209ENST00000553280 LINC00694P0DN24 101 aa1.32□□□□□ -2.2
SCFD1-209ENST00000553280 ATP11AUNQ6ZP68 121 aa1.32□□□□□ -2.2
SCFD1-209ENST00000553280 TSTD1Q8NFU3 115 aa1.32□□□□□ -2.2
SCFD1-209ENST00000553280 PPDPFLQ8WWR9 84 aa1.32□□□□□ -2.2
SCFD1-209ENST00000553280 PFDN5Q99471 154 aa1.32□□□□□ -2.2
SCFD1-209ENST00000553280 ATG5Q9H1Y0 275 aa1.32□□□□□ -2.2
SCFD1-209ENST00000553280 FBN3Q75N90 2809 aa1.32□□□□□ -2.2
SCFD1-209ENST00000553280 HIGD1CA8MV81 97 aa1.31□□□□□ -2.2
SCFD1-209ENST00000553280 Q86TA4 180 aa1.31□□□□□ -2.2
SCFD1-209ENST00000553280 TCEAL4Q96EI5 215 aa1.31□□□□□ -2.2
SCFD1-209ENST00000553280 PAIP2BQ9ULR5 123 aaKnown RBP1.31□□□□□ -2.2
SCFD1-209ENST00000553280 SNRNP200O75643 2136 aaKnown RBP1.31□□□□□ -2.2
SCFD1-209ENST00000553280 ZGRF1Q86YA3 2104 aa1.31□□□□□ -2.2
SCFD1-209ENST00000553280 TRAV17A0A0B4J275 112 aa1.3□□□□□ -2.2
SCFD1-209ENST00000553280 TRBV10-1A0A0K0K1A3 114 aa1.3□□□□□ -2.2
SCFD1-209ENST00000553280 NBDYA0A0U1RRE5 68 aa1.3□□□□□ -2.2
SCFD1-209ENST00000553280 HMGN1P05114 100 aa1.3□□□□□ -2.2
SCFD1-209ENST00000553280 IQCJQ1A5X6 159 aa1.3□□□□□ -2.2
SCFD1-209ENST00000553280 Q6ZS92 163 aa1.3□□□□□ -2.2
SCFD1-209ENST00000553280 DYNLRB2Q8TF09 96 aa1.3□□□□□ -2.2
SCFD1-209ENST00000553280 ERCC6Q03468 1493 aa1.3□□□□□ -2.2
SCFD1-209ENST00000553280 LAMA4Q16363 1823 aa1.29□□□□□ -2.2
SCFD1-209ENST00000553280 FANCMQ8IYD8 2048 aa1.29□□□□□ -2.2
SCFD1-209ENST00000553280 J3QLW9 94 aa1.29□□□□□ -2.2
SCFD1-209ENST00000553280 CAV3P56539 151 aa1.29□□□□□ -2.2
SCFD1-209ENST00000553280 FXYD3Q14802 87 aa1.29□□□□□ -2.2
SCFD1-209ENST00000553280 TPT1P8Q9HAU6 139 aa1.29□□□□□ -2.2
SCFD1-209ENST00000553280 ZCCHC6Q5VYS8 1495 aaKnown RBP1.29□□□□□ -2.2
SCFD1-209ENST00000553280 CXorf51AA0A1B0GTR3 108 aa1.28□□□□□ -2.2
SCFD1-209ENST00000553280 LOC101927531A0A1B0GV80 90 aa1.28□□□□□ -2.2
SCFD1-209ENST00000553280 K7EIL1 84 aa1.28□□□□□ -2.2
SCFD1-209ENST00000553280 K7ERU9 68 aa1.28□□□□□ -2.2
SCFD1-209ENST00000553280 VPS25Q9BRG1 176 aa1.28□□□□□ -2.2
SCFD1-209ENST00000553280 CPDO75976 1380 aa1.28□□□□□ -2.2
SCFD1-209ENST00000553280 SOGA1O94964 1423 aa1.28□□□□□ -2.2
SCFD1-209ENST00000553280 BICRAQ9NZM4 1560 aa1.28□□□□□ -2.2
SCFD1-209ENST00000553280 HELZP42694 1942 aaKnown RBP1.28□□□□□ -2.2
SCFD1-209ENST00000553280 NPFFO15130 113 aa1.27□□□□□ -2.21
SCFD1-209ENST00000553280 RPS25P62851 125 aaKnown RBP1.27□□□□□ -2.21
SCFD1-209ENST00000553280 ATOH7Q8N100 152 aa1.27□□□□□ -2.21
SCFD1-209ENST00000553280 C5orf56Q8N8D9 126 aa1.27□□□□□ -2.21
SCFD1-209ENST00000553280 SAR1AQ9NR31 198 aa1.27□□□□□ -2.21
SCFD1-209ENST00000553280 TENM1Q9UKZ4 2725 aa1.27□□□□□ -2.21
SCFD1-209ENST00000553280 MED12Q93074 2177 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms