RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 LINC00477Q96M19 166 aa10.44□□□□□ -0.74
RTN3-210ENST00000540798 SMPXQ9UHP9 88 aa10.44□□□□□ -0.74
RTN3-210ENST00000540798 GAGE12BA1L429 117 aa10.44□□□□□ -0.74
RTN3-210ENST00000540798 TWIST1Q15672 202 aa10.44□□□□□ -0.74
RTN3-210ENST00000540798 TM4SF20Q53R12 229 aa10.44□□□□□ -0.74
RTN3-210ENST00000540798 RHPN1-AS1Q9BWJ2 59 aa10.44□□□□□ -0.74
RTN3-210ENST00000540798 ORMDL3Q8N138 153 aa10.43□□□□□ -0.74
RTN3-210ENST00000540798 RNF185Q96GF1 192 aa10.43□□□□□ -0.74
RTN3-210ENST00000540798 TMEM70Q9BUB7 260 aa10.43□□□□□ -0.74
RTN3-210ENST00000540798 ZANQ9Y493 2812 aa10.43□□□□□ -0.74
RTN3-210ENST00000540798 CENPEQ02224 2701 aa10.43□□□□□ -0.74
RTN3-210ENST00000540798 TSPOP30536 169 aa10.43□□□□□ -0.74
RTN3-210ENST00000540798 PRR9Q5T870 116 aa10.43□□□□□ -0.74
RTN3-210ENST00000540798 APRG1Q8IVJ8 170 aa10.43□□□□□ -0.74
RTN3-210ENST00000540798 MUC21A0A0G2JKD1 596 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 MUC21A0A140T8X8 626 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 MUC21Q5SSG8 566 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 SAMD13Q5VXD3 122 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 LINC00173Q6ZV60 143 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 PRELID3AQ96N28 172 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 ZNF702PQ9H963 129 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 LEPROTL1O95214 131 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 FOXE3Q13461 319 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 C10orf99Q6UWK7 81 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 ZFAND2AQ8N6M9 145 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 MSRB1Q9NZV6 116 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 IGHV4-4A0A075B6R2 117 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 TRBV7-9A0A0J9YWB2 115 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 SNAI2O43623 268 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 FAM106AQ4KMX7 169 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 AP5S1Q9NUS5 200 aa10.42□□□□□ -0.74
RTN3-210ENST00000540798 SYS1-DBNDD2H3BUS1 97 aa10.41□□□□□ -0.74
RTN3-210ENST00000540798 RNF152Q8N8N0 203 aa10.41□□□□□ -0.74
RTN3-210ENST00000540798 SIGLEC8Q9NYZ4 499 aa10.41□□□□□ -0.74
RTN3-210ENST00000540798 CSPG4Q6UVK1 2322 aa10.41□□□□□ -0.74
RTN3-210ENST00000540798 TRAV26-1A0A087WT03 109 aa10.41□□□□□ -0.74
RTN3-210ENST00000540798 CSN3P07498 182 aa10.41□□□□□ -0.74
RTN3-210ENST00000540798 POLQO75417 2590 aa10.41□□□□□ -0.74
RTN3-210ENST00000540798 LINC01546A6NGU7 62 aa10.4□□□□□ -0.74
RTN3-210ENST00000540798 EDN2P20800 178 aa10.4□□□□□ -0.74
RTN3-210ENST00000540798 SMAGPQ0VAQ4 97 aa10.4□□□□□ -0.74
RTN3-210ENST00000540798 Q6ZQT7 251 aa10.4□□□□□ -0.74
RTN3-210ENST00000540798 OR10J6PQ8NGY7 276 aa10.4□□□□□ -0.74
RTN3-210ENST00000540798 UFC1Q9Y3C8 167 aa10.4□□□□□ -0.74
RTN3-210ENST00000540798 A0A096LNJ9 63 aa10.4□□□□□ -0.74
RTN3-210ENST00000540798 IFI27P40305 119 aaPredicted RBP10.4□□□□□ -0.74
RTN3-210ENST00000540798 SCGB2A2Q13296 93 aa10.4□□□□□ -0.74
RTN3-210ENST00000540798 Q96MF0 132 aa10.4□□□□□ -0.74
RTN3-210ENST00000540798 GTSF1LQ9H1H1 148 aa10.4□□□□□ -0.74
RTN3-210ENST00000540798 USP9YO00507 2555 aaPredicted RBP10.4□□□□□ -0.74
RTN3-210ENST00000540798 ELANEP08246 267 aa10.4□□□□□ -0.75
RTN3-210ENST00000540798 PRSS3P2Q8NHM4 247 aa10.4□□□□□ -0.75
RTN3-210ENST00000540798 DCANP1Q8TF63 244 aa10.4□□□□□ -0.75
RTN3-210ENST00000540798 DOPEY2Q9Y3R5 2298 aa10.39□□□□□ -0.75
RTN3-210ENST00000540798 HECTD1Q9ULT8 2610 aa10.39□□□□□ -0.75
RTN3-210ENST00000540798 TRAV9-2A0A087WT02 112 aa10.39□□□□□ -0.75
RTN3-210ENST00000540798 FA2HQ7L5A8 372 aa10.39□□□□□ -0.75
RTN3-210ENST00000540798 Q8N2B8 174 aa10.39□□□□□ -0.75
RTN3-210ENST00000540798 OR8A1Q8NGG7 326 aa10.39□□□□□ -0.75
RTN3-210ENST00000540798 HSPB8Q9UJY1 196 aa10.39□□□□□ -0.75
RTN3-210ENST00000540798 MXRA5Q9NR99 2828 aa10.39□□□□□ -0.75
RTN3-210ENST00000540798 NPYP01303 97 aa10.39□□□□□ -0.75
RTN3-210ENST00000540798 HOXA3O43365 443 aaPredicted RBP10.38□□□□□ -0.75
RTN3-210ENST00000540798 CKS2P33552 79 aa10.38□□□□□ -0.75
RTN3-210ENST00000540798 CRYBA4P53673 196 aa10.38□□□□□ -0.75
RTN3-210ENST00000540798 MPV17L2Q567V2 206 aa10.38□□□□□ -0.75
RTN3-210ENST00000540798 PET117Q6UWS5 81 aa10.38□□□□□ -0.75
RTN3-210ENST00000540798 PTPN13Q12923 2485 aa10.38□□□□□ -0.75
RTN3-210ENST00000540798 APCP25054 2843 aa10.38□□□□□ -0.75
RTN3-210ENST00000540798 TAX1BP3O14907 124 aa10.38□□□□□ -0.75
RTN3-210ENST00000540798 LGALS1P09382 135 aaKnown RBP10.38□□□□□ -0.75
RTN3-210ENST00000540798 OR10AG1Q8NH19 301 aa10.38□□□□□ -0.75
RTN3-210ENST00000540798 ZNF747Q9BV97 191 aa10.38□□□□□ -0.75
RTN3-210ENST00000540798 NBPF19A0A087WUL8 3843 aa10.38□□□□□ -0.75
RTN3-210ENST00000540798 LGALS9O00182 355 aa10.38□□□□□ -0.75
RTN3-210ENST00000540798 SETXQ7Z333 2677 aaKnown RBP10.37□□□□□ -0.75
RTN3-210ENST00000540798 SMKR1H3BMG3 65 aa10.37□□□□□ -0.75
RTN3-210ENST00000540798 DEFB1P60022 68 aa10.37□□□□□ -0.75
RTN3-210ENST00000540798 CACNG7P62955 275 aa10.37□□□□□ -0.75
RTN3-210ENST00000540798 MAP1LC3CQ9BXW4 147 aa10.37□□□□□ -0.75
RTN3-210ENST00000540798 TRAV8-6A0A0B4J262 113 aa10.37□□□□□ -0.75
RTN3-210ENST00000540798 TRAV21A0A0B4J279 112 aa10.37□□□□□ -0.75
RTN3-210ENST00000540798 SHISA2Q6UWI4 295 aa10.37□□□□□ -0.75
RTN3-210ENST00000540798 KLHDC1Q8N7A1 406 aa10.37□□□□□ -0.75
RTN3-210ENST00000540798 UBE2E2Q96LR5 201 aa10.37□□□□□ -0.75
RTN3-210ENST00000540798 NAA38Q9BRA0 125 aaKnown RBP10.37□□□□□ -0.75
RTN3-210ENST00000540798 ZNF469Q96JG9 3925 aaPredicted RBP10.36□□□□□ -0.75
RTN3-210ENST00000540798 RPL11P62913 178 aaKnown RBP10.36□□□□□ -0.75
RTN3-210ENST00000540798 NCR2O95944 276 aa10.36□□□□□ -0.75
RTN3-210ENST00000540798 LINC01545Q5VT33 79 aa10.36□□□□□ -0.75
RTN3-210ENST00000540798 LOC389332A0A1B0GUA5 103 aa10.36□□□□□ -0.75
RTN3-210ENST00000540798 OR4C46A6NHA9 309 aa10.36□□□□□ -0.75
RTN3-210ENST00000540798 F6UB75 175 aa10.36□□□□□ -0.75
RTN3-210ENST00000540798 MED14OSP0DP75 135 aa10.36□□□□□ -0.75
RTN3-210ENST00000540798 DEFB125Q8N687 156 aa10.36□□□□□ -0.75
RTN3-210ENST00000540798 GAS8-AS1O95177 125 aa10.35□□□□□ -0.75
RTN3-210ENST00000540798 IGLL1P15814 213 aa10.35□□□□□ -0.75
RTN3-210ENST00000540798 AZU1P20160 251 aa10.35□□□□□ -0.75
RTN3-210ENST00000540798 ID1P41134 155 aa10.35□□□□□ -0.75
RTN3-210ENST00000540798 KLLNB2CW77 178 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms