RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 A8MWP4 228 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 J3QRK9 145 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 K7ERS5 55 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 ITGB1BP1O14713 200 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 ATP8B1O43520 1251 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 CREBL2O60519 120 aaPredicted RBP1.89□□□□□ -2.11
CD44-235ENST00000532339 YPEL1O60688 119 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 HBZP02008 142 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 APOA2P02652 100 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 AKR1C4P17516 323 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 PHBP35232 272 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 CBX5P45973 191 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 FXYD7P58549 80 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 B2MP61769 119 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 RPS11P62280 158 aaKnown RBP eCLIP1.89□□□□□ -2.11
CD44-235ENST00000532339 MRPS15P82914 257 aaKnown RBP1.89□□□□□ -2.11
CD44-235ENST00000532339 RPL39P5Q59GN2 51 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 LINC01556Q5JQF7 62 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 IQCF2Q8IXL9 164 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 ZNF680Q8NEM1 530 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 TAMM41Q96BW9 452 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 TLCD1Q96CP7 247 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 YPEL2Q96QA6 119 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 COMMD9Q9P000 198 aa1.89□□□□□ -2.11
CD44-235ENST00000532339 TIMM8BQ9Y5J9 83 aaPredicted RBP1.89□□□□□ -2.11
CD44-235ENST00000532339 V9GYY5 206 aaPredicted RBP1.89□□□□□ -2.11
CD44-235ENST00000532339 DSTQ03001 7570 aaKnown RBP1.89□□□□□ -2.11
CD44-235ENST00000532339 TMEM14DPA8MWL7 114 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 H3BQ85 93 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 AIPO00170 330 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 ORM1P02763 201 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 TTRP02766 147 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 DEFA4P12838 97 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 GPX2P18283 190 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 ATF1P18846 271 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 PVALBP20472 110 aaPredicted RBP1.88□□□□□ -2.11
CD44-235ENST00000532339 MP68P56378 58 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 SNRPD3P62318 126 aaKnown RBP1.88□□□□□ -2.11
CD44-235ENST00000532339 CCDC153Q494R4 210 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 SLC35F6Q8N357 371 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 ATP6V0E2Q8NHE4 81 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 Q8TAT8 98 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 ZC2HC1AQ96GY0 325 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 PYURFQ96I23 114 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 GINS3Q9BRX5 216 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 TSSK6Q9BXA6 273 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 NAGKQ9UJ70 344 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 R4GN34 69 aa1.88□□□□□ -2.11
CD44-235ENST00000532339 TRAV1-1A0A0B4J248 108 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 PRM2P04554 102 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 OCMP0CE72 109 aaPredicted RBP1.87□□□□□ -2.11
CD44-235ENST00000532339 PET100P0DJ07 73 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 S100A2P29034 98 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 ETV6P41212 452 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 RPL14P50914 215 aaKnown RBP1.87□□□□□ -2.11
CD44-235ENST00000532339 RAB2AP61019 212 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 FLI1Q01543 452 aaPredicted RBP1.87□□□□□ -2.11
CD44-235ENST00000532339 VMA21Q3ZAQ7 101 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 PDZD11Q5EBL8 140 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 C10orf55Q5SWW7 151 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 SDIM1Q6ZPB5 146 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 C9orf163Q8N9P6 203 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 OTOSQ8NHW6 89 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 DTD1Q8TEA8 209 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 THEM6Q8WUY1 208 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 DPH3Q96FX2 82 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 IGF2BP2-AS1Q96M15 143 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 GABARAPL1Q9H0R8 117 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 SLC35B3Q9H1N7 401 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 OR2D2Q9H210 308 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 NOP10Q9NPE3 64 aaKnown RBP1.87□□□□□ -2.11
CD44-235ENST00000532339 PLAC8Q9NZF1 115 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 TRAPPC2LQ9UL33 140 aa1.87□□□□□ -2.11
CD44-235ENST00000532339 TRAV8-1A0A0A6YYK1 113 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 EVPLLA8MZ36 301 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 IGHV3-53P01767 116 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 RNASE2P10153 161 aaKnown RBP1.86□□□□□ -2.11
CD44-235ENST00000532339 SPI1P17947 270 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 CCL1P22362 96 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 OMPP47874 163 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 HSPA13P48723 471 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 INPP1P49441 399 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 PSG9Q00887 426 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 CAV1Q03135 178 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 DHRS2Q13268 280 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 RSU1Q15404 277 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 C4orf26Q17RF5 130 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 LINC01590Q5TEZ4 76 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 GDF5OSQ5U4N7 250 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 DPPA3Q6W0C5 159 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 IDO2Q6ZQW0 420 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 DHFR2Q86XF0 187 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 FUNDC1Q8IVP5 155 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 STX19Q8N4C7 294 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 C3orf22Q8N5N4 141 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 OR9I1Q8NGQ6 314 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 TMEM167AQ8TBQ9 72 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 PP6455Q8WZ26 134 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 UBE2WQ96B02 151 aa1.86□□□□□ -2.11
CD44-235ENST00000532339 TAF9BQ9HBM6 251 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms