RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 SRSF1Q07955 248 aaKnown RBP eCLIP14.82□□□□□ -0.046e-9■■■□□ 15.3
PCF11-203ENST00000530304 TRBV12-3P01733 135 aa14.81□□□□□ -0.04
PCF11-203ENST00000530304 GCSHP23434 173 aa14.81□□□□□ -0.04
PCF11-203ENST00000530304 VPS25Q9BRG1 176 aa14.81□□□□□ -0.04
PCF11-203ENST00000530304 LENEPQ9Y5L5 61 aa14.81□□□□□ -0.04
PCF11-203ENST00000530304 GPHB5Q86YW7 130 aa14.81□□□□□ -0.04
PCF11-203ENST00000530304 CHAC1Q9BUX1 264 aa14.81□□□□□ -0.04
PCF11-203ENST00000530304 CELSR1Q9NYQ6 3014 aa14.8□□□□□ -0.04
PCF11-203ENST00000530304 TRBV25-1A0A075B6N4 114 aa14.8□□□□□ -0.04
PCF11-203ENST00000530304 FXYD2P54710 66 aa14.8□□□□□ -0.04
PCF11-203ENST00000530304 BRD3OSQ6XYD6 125 aa14.8□□□□□ -0.04
PCF11-203ENST00000530304 LINC00477Q96M19 166 aa14.8□□□□□ -0.04
PCF11-203ENST00000530304 A0A1W2PPM0 123 aa14.79□□□□□ -0.04
PCF11-203ENST00000530304 CRIP2P52943 208 aaPredicted RBP14.79□□□□□ -0.04
PCF11-203ENST00000530304 LY6DQ14210 128 aa14.79□□□□□ -0.04
PCF11-203ENST00000530304 MRAP2Q96G30 205 aa14.79□□□□□ -0.04
PCF11-203ENST00000530304 SMIM13P0DJ93 91 aa14.79□□□□□ -0.04
PCF11-203ENST00000530304 ZFAND2AQ8N6M9 145 aa14.79□□□□□ -0.04
PCF11-203ENST00000530304 K7ERU9 68 aa14.79□□□□□ -0.04
PCF11-203ENST00000530304 SPRY2O43597 315 aa14.79□□□□□ -0.04
PCF11-203ENST00000530304 A0A087WX48 190 aa14.78□□□□□ -0.04
PCF11-203ENST00000530304 C19orf84I3L1E1 186 aa14.78□□□□□ -0.04
PCF11-203ENST00000530304 DEFB1P60022 68 aa14.78□□□□□ -0.04
PCF11-203ENST00000530304 IGHV1-69DA0A0B4J2H0 117 aa14.78□□□□□ -0.04
PCF11-203ENST00000530304 M0R381 172 aa14.78□□□□□ -0.04
PCF11-203ENST00000530304 IGHV1-69P01742 117 aa14.78□□□□□ -0.04
PCF11-203ENST00000530304 OR10J6PQ8NGY7 276 aa14.78□□□□□ -0.04
PCF11-203ENST00000530304 NDUFA4O00483 81 aa14.77□□□□□ -0.04
PCF11-203ENST00000530304 SMIM2Q9BVW6 85 aa14.77□□□□□ -0.04
PCF11-203ENST00000530304 TRAV21A0A0B4J279 112 aa14.77□□□□□ -0.05
PCF11-203ENST00000530304 SOCS3O14543 225 aa14.77□□□□□ -0.05
PCF11-203ENST00000530304 IGHV4-39P01824 125 aa14.77□□□□□ -0.05
PCF11-203ENST00000530304 SPCS1Q9Y6A9 102 aa14.77□□□□□ -0.05
PCF11-203ENST00000530304 OVOL1O14753 267 aa14.76□□□□□ -0.05
PCF11-203ENST00000530304 SAP30O75446 220 aa14.76□□□□□ -0.05
PCF11-203ENST00000530304 HLA-DRB4P13762 266 aa14.76□□□□□ -0.05
PCF11-203ENST00000530304 HLA-DRB4X5D2U9 266 aa14.76□□□□□ -0.05
PCF11-203ENST00000530304 S100A4P26447 101 aaKnown RBP14.76□□□□□ -0.05
PCF11-203ENST00000530304 SAMD5Q5TGI4 173 aa14.76□□□□□ -0.05
PCF11-203ENST00000530304 MAPKAPK5-AS1Q8N8E1 139 aa14.76□□□□□ -0.05
PCF11-203ENST00000530304 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.75□□□□□ -0.05
PCF11-203ENST00000530304 FABP2P12104 132 aa14.75□□□□□ -0.05
PCF11-203ENST00000530304 RPL11P62913 178 aaKnown RBP14.75□□□□□ -0.05
PCF11-203ENST00000530304 RASL10AQ92737 203 aa14.75□□□□□ -0.05
PCF11-203ENST00000530304 IGHV3-11P01762 117 aa14.74□□□□□ -0.05
PCF11-203ENST00000530304 LY6EQ16553 131 aa14.74□□□□□ -0.05
PCF11-203ENST00000530304 CEND1Q8N111 149 aa14.74□□□□□ -0.05
PCF11-203ENST00000530304 MEGF9Q9H1U4 602 aa14.74□□□□□ -0.05
PCF11-203ENST00000530304 ABCA2Q9BZC7 2435 aa14.74□□□□□ -0.05
PCF11-203ENST00000530304 K7ERJ3 54 aa14.74□□□□□ -0.05
PCF11-203ENST00000530304 PLNP26678 52 aa14.74□□□□□ -0.05
PCF11-203ENST00000530304 SUMO2P61956 95 aaKnown RBP14.74□□□□□ -0.05
PCF11-203ENST00000530304 ANXA2RQ3ZCQ2 193 aa14.74□□□□□ -0.05
PCF11-203ENST00000530304 C14orf178Q8N769 122 aaPredicted RBP14.74□□□□□ -0.05
PCF11-203ENST00000530304 TM2D2Q9BX73 214 aa14.74□□□□□ -0.05
PCF11-203ENST00000530304 PHLDA3Q9Y5J5 127 aa14.74□□□□□ -0.05
PCF11-203ENST00000530304 ASIPP42127 132 aa14.73□□□□□ -0.05
PCF11-203ENST00000530304 OR5A1Q8NGJ0 315 aa14.73□□□□□ -0.05
PCF11-203ENST00000530304 KLK15Q9H2R5 256 aa14.73□□□□□ -0.05
PCF11-203ENST00000530304 DPH3P1Q9H4G8 78 aa14.73□□□□□ -0.05
PCF11-203ENST00000530304 F6UB75 175 aa14.73□□□□□ -0.05
PCF11-203ENST00000530304 ORMDL2Q53FV1 153 aa14.73□□□□□ -0.05
PCF11-203ENST00000530304 RPL39LQ96EH5 51 aaKnown RBP14.73□□□□□ -0.05
PCF11-203ENST00000530304 RNASE4P34096 147 aaKnown RBP14.72□□□□□ -0.05
PCF11-203ENST00000530304 IGKV3-7A0A075B6H7 116 aa14.72□□□□□ -0.05
PCF11-203ENST00000530304 TRAV12-1A0A0B4J245 112 aa14.72□□□□□ -0.05
PCF11-203ENST00000530304 H7C1H1 209 aa14.72□□□□□ -0.05
PCF11-203ENST00000530304 PHLDA1Q8WV24 401 aaPredicted RBP14.72□□□□□ -0.05
PCF11-203ENST00000530304 USMG5Q96IX5 58 aa14.72□□□□□ -0.05
PCF11-203ENST00000530304 FAM19A4Q96LR4 140 aa14.72□□□□□ -0.05
PCF11-203ENST00000530304 C20orf78Q9BR46 151 aa14.72□□□□□ -0.05
PCF11-203ENST00000530304 IGHV4-61A0A0C4DH41 118 aa14.71□□□□□ -0.05
PCF11-203ENST00000530304 F8VRH5 84 aa14.71□□□□□ -0.05
PCF11-203ENST00000530304 IGHV4-38-2P0DP08 117 aa14.71□□□□□ -0.05
PCF11-203ENST00000530304 TOMM6Q96B49 74 aa14.71□□□□□ -0.05
PCF11-203ENST00000530304 SCGB3A1Q96QR1 104 aa14.71□□□□□ -0.05
PCF11-203ENST00000530304 NHP2Q9NX24 153 aaKnown RBP14.71□□□□□ -0.05
PCF11-203ENST00000530304 GNRH2O43555 120 aa14.71□□□□□ -0.06
PCF11-203ENST00000530304 K7EMI3 77 aa14.7□□□□□ -0.06
PCF11-203ENST00000530304 IGHG2P01859 326 aa14.7□□□□□ -0.06
PCF11-203ENST00000530304 NEGR1Q7Z3B1 354 aa14.7□□□□□ -0.06
PCF11-203ENST00000530304 MGPP08493 103 aa14.69□□□□□ -0.06
PCF11-203ENST00000530304 PF4V1P10720 104 aa14.69□□□□□ -0.06
PCF11-203ENST00000530304 H3BUA1 57 aa14.69□□□□□ -0.06
PCF11-203ENST00000530304 H3BUX3 64 aa14.69□□□□□ -0.06
PCF11-203ENST00000530304 SLC25A16P16260 332 aa14.69□□□□□ -0.06
PCF11-203ENST00000530304 BLCAPP62952 87 aa14.69□□□□□ -0.06
PCF11-203ENST00000530304 LCNL1Q6ZST4 164 aa14.69□□□□□ -0.06
PCF11-203ENST00000530304 CHTOPQ9Y3Y2 248 aaKnown RBP14.69□□□□□ -0.06
PCF11-203ENST00000530304 RNF223E7ERA6 249 aa14.68□□□□□ -0.06
PCF11-203ENST00000530304 BRI3O95415 125 aa14.68□□□□□ -0.06
PCF11-203ENST00000530304 RNASE3P12724 160 aaKnown RBP14.68□□□□□ -0.06
PCF11-203ENST00000530304 APRG1Q8IVJ8 170 aa14.68□□□□□ -0.06
PCF11-203ENST00000530304 NEXN-AS1Q8NBZ9 246 aa14.68□□□□□ -0.06
PCF11-203ENST00000530304 RHPN1-AS1Q9BWJ2 59 aa14.68□□□□□ -0.06
PCF11-203ENST00000530304 MED14OSP0DP75 135 aa14.68□□□□□ -0.06
PCF11-203ENST00000530304 GNLYP22749 145 aa14.68□□□□□ -0.06
PCF11-203ENST00000530304 Q6ZS46 218 aa14.68□□□□□ -0.06
PCF11-203ENST00000530304 PIMREGQ9BSJ6 248 aa14.68□□□□□ -0.06
PCF11-203ENST00000530304 SPOCK3Q9BQ16 436 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms