RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 NDUFA2O43678 99 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 PIAS1O75925 651 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 ZNF682O95780 498 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 METTL15P1P0C7V9 234 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 KDELR1P24390 212 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 SDC2P34741 201 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 FAUP35544 74 aaKnown RBP1.84□□□□□ -2.11
CD44-223ENST00000526553 RBP2P50120 134 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 FXYD2P54710 66 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 PKIAP61925 76 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 TSNQ15631 228 aaKnown RBP1.84□□□□□ -2.11
CD44-223ENST00000526553 ZNF791Q3KP31 576 aaPredicted RBP1.84□□□□□ -2.11
CD44-223ENST00000526553 CLLU1Q5K131 121 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 AKR1C8PQ5T2L2 129 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 TMED4Q7Z7H5 227 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 KTN1-AS1Q86SY8 53 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 ANGPTL5Q86XS5 388 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 H1FXQ92522 213 aaKnown RBP1.84□□□□□ -2.11
CD44-223ENST00000526553 C2orf50Q96LR7 162 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 MIXL1Q9H2W2 232 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 RERGLQ9H628 205 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 C14orf105Q9NVL8 296 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 SSR3Q9UNL2 185 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 DNAJC13O75165 2243 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 ZNF469Q96JG9 3925 aaPredicted RBP1.84□□□□□ -2.12
CD44-223ENST00000526553 NCOA6Q14686 2063 aaPredicted RBP1.84□□□□□ -2.12
CD44-223ENST00000526553 FN1P02751 2386 aaKnown RBP1.84□□□□□ -2.12
CD44-223ENST00000526553 FLNAP21333 2647 aaKnown RBP1.84□□□□□ -2.12
CD44-223ENST00000526553 EML6Q6ZMW3 1958 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 CHD3Q12873 2000 aaKnown RBP1.83□□□□□ -2.12
CD44-223ENST00000526553 hCG_1818297A0A087WSY0 165 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 PIGBOS1A0A0B4J2F0 54 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 A0A0D9SG52 128 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 A0A0G2JQZ4 141 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 TRBV10-2A0A0K0K1G8 114 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 C20orf202A1L168 122 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 NAP1L6A6NFF2 107 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 RFPL4AA6NLU0 287 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 SIGLEC16A6NMB1 481 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 A8MT66 165 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 RFPL4AL1F8VTS6 287 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 C19orf84I3L1E1 186 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 J3QRK9 145 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 M0R143 59 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 IFNA21P01568 189 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 CD2P06729 351 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 FREM3P0C091 2139 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 P0DMU3 169 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 FAM231AP0DMU4 169 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 FAM231CP0DMU5 169 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 RPS4Y1P22090 263 aaKnown RBP1.83□□□□□ -2.12
CD44-223ENST00000526553 ZNF80P51504 273 aaPredicted RBP1.83□□□□□ -2.12
CD44-223ENST00000526553 TEX261Q6UWH6 196 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 ACBD7Q8N6N7 88 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 ST6GALNAC3Q8NDV1 305 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 Q8NDZ9 215 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 DCANP1Q8TF63 244 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 SKA2Q8WVK7 121 aaPredicted RBP1.83□□□□□ -2.12
CD44-223ENST00000526553 C11orf40Q8WZ69 217 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 SCGB3A1Q96QR1 104 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 RNF122Q9H9V4 155 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 NIT2Q9NQR4 276 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 SMCO4Q9NRQ5 59 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 UQCC1Q9NVA1 299 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 HSPB11Q9Y547 144 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 NUBP2Q9Y5Y2 271 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 U3KQ87 197 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 SCN3AQ9NY46 2000 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 NBEAL1Q6ZS30 2694 aa1.83□□□□□ -2.12
CD44-223ENST00000526553 COL6A5A8TX70 2615 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 VPS13CQ709C8 3753 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 IGKV1D-43A0A0B4J1Z2 117 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 OR51F1A6NGY5 319 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 HMSDA8MTL9 139 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 C5orf58C9J3I9 102 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 AIPO00170 330 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 APOC3P02656 99 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 PPBPP02775 128 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 SCGB1A1P11684 91 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 PEBP1P30086 187 aaKnown RBP1.82□□□□□ -2.12
CD44-223ENST00000526553 G6PCP35575 357 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 RPL35P42766 123 aaKnown RBP1.82□□□□□ -2.12
CD44-223ENST00000526553 PPP3R1P63098 170 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 DEFA5Q01523 94 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 PEA15Q15121 130 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 TAF1AQ15573 450 aaPredicted RBP1.82□□□□□ -2.12
CD44-223ENST00000526553 SLC36A1Q7Z2H8 476 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 DEFB107AQ8IZN7 70 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 OR11H6Q8NGC7 330 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 AP1S3Q96PC3 154 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 RNASE7Q9H1E1 156 aaKnown RBP1.82□□□□□ -2.12
CD44-223ENST00000526553 ENY2Q9NPA8 101 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 TVP23BQ9NYZ1 205 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 OPTCQ9UBM4 332 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 TLN2Q9Y4G6 2542 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 CPAMD8Q8IZJ3 1885 aa1.82□□□□□ -2.12
CD44-223ENST00000526553 ATRQ13535 2644 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 MEIKINA0A087WXM9 373 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 KANTRA0A1W2PQU2 76 aa1.81□□□□□ -2.12
CD44-223ENST00000526553 ZNF860A6NHJ4 632 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms