RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 TRAV8-2A0A0B4J237 113 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 SLC25A16P16260 332 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 B5MCH6 92 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 SRSF1Q07955 248 aaKnown RBP eCLIP7.48□□□□□ -1.21
VCAN-210ENST00000513960 DYNAPQ8N1N2 210 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 Q8N8P6 123 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 CFHR4Q92496 578 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 MYMXA0A1B0GTQ4 84 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 PRSS29PA6NIE9 313 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 PRAC2D3DTV9 90 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 LY6LH3BQJ8 138 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 KLRD1Q13241 179 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 TMEM170BQ5T4T1 132 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 ZFP2Q6ZN57 461 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 TEX29Q8N6K0 151 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 KLHL30-AS1Q8NEE0 82 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 TM2D2Q9BX73 214 aa7.48□□□□□ -1.21
VCAN-210ENST00000513960 RAX2Q96IS3 184 aa7.47□□□□□ -1.21
VCAN-210ENST00000513960 SPATA25Q9BR10 227 aa7.47□□□□□ -1.21
VCAN-210ENST00000513960 PRADC1Q9BSG0 188 aa7.47□□□□□ -1.21
VCAN-210ENST00000513960 F5H697 171 aa7.47□□□□□ -1.21
VCAN-210ENST00000513960 H7C1H1 209 aa7.47□□□□□ -1.21
VCAN-210ENST00000513960 LYRM7Q5U5X0 104 aa7.47□□□□□ -1.21
VCAN-210ENST00000513960 LY6G5BQ8NDX9 201 aa7.47□□□□□ -1.21
VCAN-210ENST00000513960 C1QTNF4Q9BXJ3 329 aa7.47□□□□□ -1.21
VCAN-210ENST00000513960 U3KQK5 164 aa7.47□□□□□ -1.21
VCAN-210ENST00000513960 IGHV3-64A0A075B6Q5 118 aa7.47□□□□□ -1.21
VCAN-210ENST00000513960 A8MWV9 139 aa7.47□□□□□ -1.21
VCAN-210ENST00000513960 OR11H6Q8NGC7 330 aa7.47□□□□□ -1.21
VCAN-210ENST00000513960 RNF185Q96GF1 192 aa7.47□□□□□ -1.21
VCAN-210ENST00000513960 TRBV20-1A0A075B6N2 111 aa7.46□□□□□ -1.21
VCAN-210ENST00000513960 A0A087WX48 190 aa7.46□□□□□ -1.21
VCAN-210ENST00000513960 PLNP26678 52 aa7.46□□□□□ -1.21
VCAN-210ENST00000513960 PHLDA1Q8WV24 401 aaPredicted RBP7.46□□□□□ -1.21
VCAN-210ENST00000513960 ARHGAP32A7KAX9 2087 aa7.46□□□□□ -1.21
VCAN-210ENST00000513960 COL6A6A6NMZ7 2263 aa7.46□□□□□ -1.21
VCAN-210ENST00000513960 M0R1W7 72 aa7.46□□□□□ -1.22
VCAN-210ENST00000513960 PSMG4Q5JS54 123 aa7.46□□□□□ -1.22
VCAN-210ENST00000513960 KIR2DL4Q99706 377 aa7.46□□□□□ -1.22
VCAN-210ENST00000513960 IGF2RP11717 2491 aa7.46□□□□□ -1.22
VCAN-210ENST00000513960 GATA3P23771 443 aa7.46□□□□□ -1.22
VCAN-210ENST00000513960 ADORA2A-AS1P86434 159 aa7.46□□□□□ -1.22
VCAN-210ENST00000513960 ZFAND6Q6FIF0 208 aa7.46□□□□□ -1.22
VCAN-210ENST00000513960 C5orf64Q2M2E5 130 aa7.45□□□□□ -1.22
VCAN-210ENST00000513960 TTC32Q5I0X7 151 aa7.45□□□□□ -1.22
VCAN-210ENST00000513960 C14orf178Q8N769 122 aaPredicted RBP7.45□□□□□ -1.22
VCAN-210ENST00000513960 KALRNO60229 2985 aa7.45□□□□□ -1.22
VCAN-210ENST00000513960 F8VRH5 84 aa7.45□□□□□ -1.22
VCAN-210ENST00000513960 XGP55808 180 aa7.45□□□□□ -1.22
VCAN-210ENST00000513960 IGHV4-39P01824 125 aa7.45□□□□□ -1.22
VCAN-210ENST00000513960 HERVK_113P61574 105 aa7.45□□□□□ -1.22
VCAN-210ENST00000513960 PDE6HQ13956 83 aa7.45□□□□□ -1.22
VCAN-210ENST00000513960 CDSNQ15517 529 aa7.45□□□□□ -1.22
VCAN-210ENST00000513960 PHLDA3Q9Y5J5 127 aa7.45□□□□□ -1.22
VCAN-210ENST00000513960 C9JAW5 83 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 SNCGO76070 127 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 NDPQ00604 133 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 TCTEX1D4Q5JR98 221 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 Q6ZUT4 128 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 SPTAN1Q13813 2472 aaKnown RBP7.44□□□□□ -1.22
VCAN-210ENST00000513960 NPBQ8NG41 125 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 PLEKHB2Q96CS7 222 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 BSNQ9UPA5 3926 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 PPDPFLQ8WWR9 84 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 C16orf92Q96LL3 132 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 LGALS1P09382 135 aaKnown RBP7.44□□□□□ -1.22
VCAN-210ENST00000513960 IGLC6P0CF74 106 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 TAL2Q16559 108 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 CLEC19AQ6UXS0 136 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 Q6ZQT7 251 aa7.44□□□□□ -1.22
VCAN-210ENST00000513960 TRBV6-1A0A0K0K1D8 114 aa7.43□□□□□ -1.22
VCAN-210ENST00000513960 HOXB4P17483 251 aaPredicted RBP7.43□□□□□ -1.22
VCAN-210ENST00000513960 RPL39LQ96EH5 51 aaKnown RBP7.43□□□□□ -1.22
VCAN-210ENST00000513960 CREBBPQ92793 2442 aa7.43□□□□□ -1.22
VCAN-210ENST00000513960 C2orf66Q6UXQ4 117 aa7.43□□□□□ -1.22
VCAN-210ENST00000513960 VMO1Q7Z5L0 202 aa7.43□□□□□ -1.22
VCAN-210ENST00000513960 TMEM190Q8WZ59 177 aa7.43□□□□□ -1.22
VCAN-210ENST00000513960 TRAV2A0A0B4J234 112 aa7.43□□□□□ -1.22
VCAN-210ENST00000513960 LINC01548A6NM66 108 aa7.43□□□□□ -1.22
VCAN-210ENST00000513960 GAGE2BQ13066 116 aa7.43□□□□□ -1.22
VCAN-210ENST00000513960 GAGE2EQ4V326 116 aa7.43□□□□□ -1.22
VCAN-210ENST00000513960 NFE4Q86UQ8 179 aa7.43□□□□□ -1.22
VCAN-210ENST00000513960 GATD1Q8NB37 220 aa7.43□□□□□ -1.22
VCAN-210ENST00000513960 GAGE2DQ9UEU5 116 aa7.43□□□□□ -1.22
VCAN-210ENST00000513960 ODF3BA8MYP8 253 aa7.42□□□□□ -1.22
VCAN-210ENST00000513960 OVOL3O00110 214 aa7.42□□□□□ -1.22
VCAN-210ENST00000513960 TSPAN13O95857 204 aa7.42□□□□□ -1.22
VCAN-210ENST00000513960 FAM74A4Q5TZK3 123 aa7.42□□□□□ -1.22
VCAN-210ENST00000513960 SVIPQ8NHG7 77 aa7.42□□□□□ -1.22
VCAN-210ENST00000513960 SMIM2Q9BVW6 85 aa7.42□□□□□ -1.22
VCAN-210ENST00000513960 PRSS2P07478 247 aa7.42□□□□□ -1.22
VCAN-210ENST00000513960 LGALS3P17931 250 aaKnown RBP7.42□□□□□ -1.22
VCAN-210ENST00000513960 C11orf71Q6IPW1 123 aa7.42□□□□□ -1.22
VCAN-210ENST00000513960 ANKRD29Q8N6D5 301 aa7.42□□□□□ -1.22
VCAN-210ENST00000513960 AGPAT4-IT1Q9H0P7 198 aa7.42□□□□□ -1.22
VCAN-210ENST00000513960 IGKV3D-20A0A0C4DH25 116 aa7.41□□□□□ -1.22
VCAN-210ENST00000513960 OOSP1A8MZH6 123 aa7.41□□□□□ -1.22
VCAN-210ENST00000513960 ORMDL2Q53FV1 153 aa7.41□□□□□ -1.22
VCAN-210ENST00000513960 C3orf56Q8N813 242 aa7.41□□□□□ -1.22
VCAN-210ENST00000513960 IGLV11-55A0A075B6I3 123 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms