RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 C1orf43Q9BWL3 253 aa9.29□□□□□ -0.92
LIMCH1-213ENST00000511496 IGHV3-72A0A0B4J1Y9 119 aa9.29□□□□□ -0.92
LIMCH1-213ENST00000511496 TRACP01848 142 aa9.29□□□□□ -0.92
LIMCH1-213ENST00000511496 NSUN5P1Q3KNT7 163 aa9.29□□□□□ -0.92
LIMCH1-213ENST00000511496 EIF4EBP3O60516 100 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-213ENST00000511496 CNTFRP26992 372 aa9.28□□□□□ -0.92
LIMCH1-213ENST00000511496 RPS28P62857 69 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-213ENST00000511496 SLC25A29Q8N8R3 303 aa9.28□□□□□ -0.92
LIMCH1-213ENST00000511496 TRAV17A0A0B4J275 112 aa9.28□□□□□ -0.92
LIMCH1-213ENST00000511496 H7C423 109 aa9.28□□□□□ -0.92
LIMCH1-213ENST00000511496 COX7CP15954 63 aa9.28□□□□□ -0.92
LIMCH1-213ENST00000511496 CYSTM1Q9H1C7 97 aa9.28□□□□□ -0.92
LIMCH1-213ENST00000511496 C11orf86A6NJI1 115 aa9.28□□□□□ -0.92
LIMCH1-213ENST00000511496 TNFAIP6P98066 277 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-213ENST00000511496 S4R3C0 116 aa9.28□□□□□ -0.92
LIMCH1-213ENST00000511496 TRIAP1O43715 76 aa9.27□□□□□ -0.92
LIMCH1-213ENST00000511496 TSPEAR-AS2P59090 65 aa9.27□□□□□ -0.92
LIMCH1-213ENST00000511496 RNF152Q8N8N0 203 aa9.27□□□□□ -0.92
LIMCH1-213ENST00000511496 NRACQ8N912 160 aa9.27□□□□□ -0.92
LIMCH1-213ENST00000511496 TMEM167AQ8TBQ9 72 aa9.27□□□□□ -0.92
LIMCH1-213ENST00000511496 OVOL1O14753 267 aa9.27□□□□□ -0.93
LIMCH1-213ENST00000511496 MUSTN1Q8IVN3 82 aa9.27□□□□□ -0.93
LIMCH1-213ENST00000511496 TMEM263Q8WUH6 116 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-213ENST00000511496 DPH3Q96FX2 82 aa9.27□□□□□ -0.93
LIMCH1-213ENST00000511496 METTL26Q96S19 204 aa9.27□□□□□ -0.93
LIMCH1-213ENST00000511496 RS1O15537 224 aa9.27□□□□□ -0.93
LIMCH1-213ENST00000511496 CGB3P0DN86 165 aa9.27□□□□□ -0.93
LIMCH1-213ENST00000511496 CGB7P0DN87 165 aa9.27□□□□□ -0.93
LIMCH1-213ENST00000511496 C2orf66Q6UXQ4 117 aa9.27□□□□□ -0.93
LIMCH1-213ENST00000511496 CLEC2BQ92478 149 aa9.27□□□□□ -0.93
LIMCH1-213ENST00000511496 RP1L1Q8IWN7 2480 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-213ENST00000511496 TRANK1O15050 2925 aa9.26□□□□□ -0.93
LIMCH1-213ENST00000511496 IGHV3-64A0A075B6Q5 118 aa9.26□□□□□ -0.93
LIMCH1-213ENST00000511496 P0DMU3 169 aa9.26□□□□□ -0.93
LIMCH1-213ENST00000511496 FAM231AP0DMU4 169 aa9.26□□□□□ -0.93
LIMCH1-213ENST00000511496 FAM231CP0DMU5 169 aa9.26□□□□□ -0.93
LIMCH1-213ENST00000511496 PKIGQ9Y2B9 76 aa9.26□□□□□ -0.93
LIMCH1-213ENST00000511496 MSRB2Q9Y3D2 182 aa9.26□□□□□ -0.93
LIMCH1-213ENST00000511496 OXTP01178 125 aa9.26□□□□□ -0.93
LIMCH1-213ENST00000511496 TMEM240Q5SV17 173 aa9.26□□□□□ -0.93
LIMCH1-213ENST00000511496 SLC25A45Q8N413 288 aa9.26□□□□□ -0.93
LIMCH1-213ENST00000511496 HES7Q9BYE0 225 aa9.26□□□□□ -0.93
LIMCH1-213ENST00000511496 ROS1P08922 2347 aa9.26□□□□□ -0.93
LIMCH1-213ENST00000511496 TRAV8-3A0A0A6YYJ7 113 aa9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 SHANK2-AS3Q9BTD1 123 aa9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 SRRM5B3KS81 715 aa9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 PRSS2P07478 247 aa9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 UCNP55089 124 aa9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 DLX1P56177 255 aa9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 SMIM2Q9BVW6 85 aa9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 MAP1BP46821 2468 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 DSCAMO60469 2012 aa9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 J3QLI3 93 aa9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 LGALS3P17931 250 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 SPANXN1Q5VSR9 72 aa9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 ZNF575Q86XF7 245 aa9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 MRAPQ8TCY5 172 aa9.25□□□□□ -0.93
LIMCH1-213ENST00000511496 LINC01565O15544 149 aa9.24□□□□□ -0.93
LIMCH1-213ENST00000511496 CCL13Q99616 98 aa9.24□□□□□ -0.93
LIMCH1-213ENST00000511496 ARHGAP32A7KAX9 2087 aa9.24□□□□□ -0.93
LIMCH1-213ENST00000511496 KLRB1Q12918 225 aa9.24□□□□□ -0.93
LIMCH1-213ENST00000511496 ERCC8Q13216 396 aa9.24□□□□□ -0.93
LIMCH1-213ENST00000511496 LYPD1Q8N2G4 141 aa9.24□□□□□ -0.93
LIMCH1-213ENST00000511496 RPL27AP46776 148 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-213ENST00000511496 ORMDL2Q53FV1 153 aa9.24□□□□□ -0.93
LIMCH1-213ENST00000511496 ZNRF2Q8NHG8 242 aa9.24□□□□□ -0.93
LIMCH1-213ENST00000511496 TOMM6Q96B49 74 aa9.24□□□□□ -0.93
LIMCH1-213ENST00000511496 IMUPQ9GZP8 106 aa9.24□□□□□ -0.93
LIMCH1-213ENST00000511496 VMA21Q3ZAQ7 101 aa9.23□□□□□ -0.93
LIMCH1-213ENST00000511496 SMCR5Q8TEV8 140 aa9.23□□□□□ -0.93
LIMCH1-213ENST00000511496 FAM240AA0A1B0GVK7 77 aa9.23□□□□□ -0.93
LIMCH1-213ENST00000511496 GUSBP11Q6P575 273 aa9.23□□□□□ -0.93
LIMCH1-213ENST00000511496 FAM216BQ8N7L0 139 aa9.23□□□□□ -0.93
LIMCH1-213ENST00000511496 SPRY3O43610 288 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 IGKV1-17P01599 117 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 CFHR4Q92496 578 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 J3QQQ9 107 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 CRYGAP11844 174 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 UBE2E1P51965 193 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 C10orf105Q8TEF2 133 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 JPT2Q9H910 190 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 TRAV12-3A0A0B4J271 114 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 IGHV5-10-1A0A0J9YXX1 117 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 H3BRN7 92 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 IL11RAQ14626 422 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 RHOHQ15669 191 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 Q6ZSV7 163 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 RPL39LQ96EH5 51 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 RNF125Q96EQ8 232 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 FAM19A4Q96LR4 140 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 KALRNO60229 2985 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 MED13Q9UHV7 2174 aa9.22□□□□□ -0.93
LIMCH1-213ENST00000511496 NACAE9PAV3 2078 aa9.21□□□□□ -0.93
LIMCH1-213ENST00000511496 A0A0G2JNJ9 132 aa9.21□□□□□ -0.93
LIMCH1-213ENST00000511496 COX6CP09669 75 aa9.21□□□□□ -0.93
LIMCH1-213ENST00000511496 CCL3L1P16619 93 aa9.21□□□□□ -0.93
LIMCH1-213ENST00000511496 NPC2P61916 151 aa9.21□□□□□ -0.93
LIMCH1-213ENST00000511496 Q5XG85 94 aa9.21□□□□□ -0.93
LIMCH1-213ENST00000511496 Q9UFV3 132 aa9.21□□□□□ -0.93
LIMCH1-213ENST00000511496 H3BT86 120 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms