RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 SHANK2-AS3Q9BTD1 123 aa5.76□□□□□ -1.49
SYNE1-228ENST00000490135 RP1L1Q8IWN7 2480 aaPredicted RBP5.76□□□□□ -1.49
SYNE1-228ENST00000490135 IGKV1-27A0A075B6S5 117 aa5.76□□□□□ -1.49
SYNE1-228ENST00000490135 NTN3O00634 580 aaPredicted RBP5.76□□□□□ -1.49
SYNE1-228ENST00000490135 EDN2P20800 178 aa5.76□□□□□ -1.49
SYNE1-228ENST00000490135 ADAMTSL1Q8N6G6 1762 aa5.76□□□□□ -1.49
SYNE1-228ENST00000490135 PRSS46E5RG02 174 aa5.76□□□□□ -1.49
SYNE1-228ENST00000490135 FOXE3Q13461 319 aa5.76□□□□□ -1.49
SYNE1-228ENST00000490135 TEX36Q5VZQ5 186 aa5.76□□□□□ -1.49
SYNE1-228ENST00000490135 Q71RC1 249 aaPredicted RBP5.76□□□□□ -1.49
SYNE1-228ENST00000490135 COL4A1P02462 1669 aa5.76□□□□□ -1.49
SYNE1-228ENST00000490135 SIP14410 1827 aa5.76□□□□□ -1.49
SYNE1-228ENST00000490135 IGKV1-12A0A0C4DH73 117 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 IGKV1D-12P01611 117 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 UBE2E1P51965 193 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 SPRR3Q9UBC9 169 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 PAPPA2Q9BXP8 1791 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 SRRM5B3KS81 715 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 KIR2DL5BQ8NHK3 375 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 ZNF837Q96EG3 531 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-228ENST00000490135 HS3ST6Q96QI5 342 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 BPESC1Q9GZL8 116 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 Q6ZS49 121 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 SLC25A29Q8N8R3 303 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 IMUPQ9GZP8 106 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 ARID1AO14497 2285 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 LGALS9O00182 355 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 CXCL5P42830 114 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 RUSC1-AS1Q66K80 236 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 NDUFA11Q86Y39 141 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 C1orf147Q96MC9 270 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-228ENST00000490135 WIPF1O43516 503 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 COX7B2Q8TF08 81 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 ICOSQ9Y6W8 199 aa5.75□□□□□ -1.49
SYNE1-228ENST00000490135 GOLGB1Q14789 3259 aaKnown RBP5.75□□□□□ -1.49
SYNE1-228ENST00000490135 COL11A2P13942 1736 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-228ENST00000490135 AGPAT4-IT1Q9H0P7 198 aa5.74□□□□□ -1.49
SYNE1-228ENST00000490135 IGLV2-23P01705 113 aa5.74□□□□□ -1.49
SYNE1-228ENST00000490135 NFE4Q86UQ8 179 aa5.74□□□□□ -1.49
SYNE1-228ENST00000490135 C8orf49Q96NF6 230 aa5.74□□□□□ -1.49
SYNE1-228ENST00000490135 B9D2Q9BPU9 175 aa5.74□□□□□ -1.49
SYNE1-228ENST00000490135 SCN3AQ9NY46 2000 aa5.74□□□□□ -1.49
SYNE1-228ENST00000490135 GDF5OSQ5U4N7 250 aa5.74□□□□□ -1.49
SYNE1-228ENST00000490135 F8VRH5 84 aa5.74□□□□□ -1.49
SYNE1-228ENST00000490135 J3QQQ9 107 aa5.74□□□□□ -1.49
SYNE1-228ENST00000490135 PIFOQ8TCI5 191 aa5.74□□□□□ -1.49
SYNE1-228ENST00000490135 PRR15LQ9BU68 103 aa5.74□□□□□ -1.49
SYNE1-228ENST00000490135 ATP6V0E1O15342 81 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 FOXF2Q12947 444 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 DYNAPQ8N1N2 210 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 MDFICQ9P1T7 246 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 KIAA0100Q14667 2235 aaKnown RBP5.73□□□□□ -1.49
SYNE1-228ENST00000490135 TRPM7Q96QT4 1865 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 ODF3L1Q8IXM7 274 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 OPRPNQ99935 248 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-228ENST00000490135 H3BT86 120 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 MRPS12O15235 138 aaKnown RBP5.73□□□□□ -1.49
SYNE1-228ENST00000490135 GAFA1Q96PS6 74 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 TRBV19A0A075B6N1 114 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 TRAV3A0A0B4J244 114 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 CRYGSP22914 178 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 NOP10Q9NPE3 64 aaKnown RBP5.73□□□□□ -1.49
SYNE1-228ENST00000490135 F8W735 103 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-228ENST00000490135 TGFBR3LH3BV60 316 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 ZNF134P52741 427 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 DOCK6Q96HP0 2047 aa5.73□□□□□ -1.49
SYNE1-228ENST00000490135 PTPRDP23468 1912 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 TRAV26-2A0A0B4J265 109 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 IGHV1-69DA0A0B4J2H0 117 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 IGHV1-69P01742 117 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 HOXB4P17483 251 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-228ENST00000490135 HIGD2BQ4VC39 106 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 CD177Q8N6Q3 437 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 NDUFA4O00483 81 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 IGHV3-30P01768 117 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 IGHV3-33P01772 117 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 IGHV3-30-3P0DP02 117 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 IGHV3-30-5P0DP03 117 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 RNASE13Q5GAN3 156 aaKnown RBP5.72□□□□□ -1.49
SYNE1-228ENST00000490135 Q9H8V8 135 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 SERP1Q9Y6X1 66 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 H0YGX0 51 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 RPS28P62857 69 aaKnown RBP5.72□□□□□ -1.49
SYNE1-228ENST00000490135 SERP2Q8N6R1 65 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 USP17L23D6RBM5 183 aa5.72□□□□□ -1.49
SYNE1-228ENST00000490135 CASP8AP2Q9UKL3 1982 aa5.71□□□□□ -1.49
SYNE1-228ENST00000490135 J3QKU1 62 aa5.71□□□□□ -1.49
SYNE1-228ENST00000490135 COX7A2LO14548 114 aa5.71□□□□□ -1.49
SYNE1-228ENST00000490135 BRI3O95415 125 aa5.71□□□□□ -1.49
SYNE1-228ENST00000490135 SCN2AQ99250 2005 aa5.71□□□□□ -1.49
SYNE1-228ENST00000490135 NRXN2Q9P2S2 1712 aa5.71□□□□□ -1.49
SYNE1-228ENST00000490135 COL8A2P25067 703 aa5.71□□□□□ -1.49
SYNE1-228ENST00000490135 PLA2G5P39877 138 aa5.71□□□□□ -1.49
SYNE1-228ENST00000490135 FAM120AOSQ5T036 256 aa5.71□□□□□ -1.49
SYNE1-228ENST00000490135 C9orf66Q5T8R8 295 aa5.71□□□□□ -1.49
SYNE1-228ENST00000490135 SEM1Q6ZVN7 128 aa5.71□□□□□ -1.49
SYNE1-228ENST00000490135 MRPL53Q96EL3 112 aaKnown RBP5.71□□□□□ -1.49
SYNE1-228ENST00000490135 XIRP1Q702N8 1843 aaKnown RBP5.71□□□□□ -1.5
SYNE1-228ENST00000490135 C5orf63A6NC05 138 aa5.71□□□□□ -1.5
SYNE1-228ENST00000490135 SNRNP200O75643 2136 aaKnown RBP5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms