RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PIEZO1Q92508 2521 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 WDR87Q6ZQQ6 2873 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 ZFHX2Q9C0A1 2572 aaPredicted RBP3.71□□□□□ -1.81
USP40-213ENST00000483216 CABIN1Q9Y6J0 2220 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 TMEM213A2RRL7 107 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 A8MWV9 139 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 F2Z2F3 143 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 SPINK4O60575 86 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 SS18L1O75177 396 aaPredicted RBP3.71□□□□□ -1.82
USP40-213ENST00000483216 IGKCP01834 107 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 SLC25A5P05141 298 aaKnown RBP3.71□□□□□ -1.82
USP40-213ENST00000483216 ACYP1P07311 99 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 IFITM1P13164 125 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 CCL2P13500 99 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 NMUP48645 174 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 MLF1P58340 268 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 HERVK_113P61574 105 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 FXYD3Q14802 87 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 PMVKQ15126 192 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 ASCL5Q7RTU5 278 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 MOB3BQ86TA1 216 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 SLC25A45Q8N413 288 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 OR11H6Q8NGC7 330 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 RPEQ96AT9 228 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 IMUPQ9GZP8 106 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 IFI27L2Q9H2X8 130 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 TMEM14CQ9P0S9 112 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 CACNA1EQ15878 2313 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 EXPH5Q8NEV8 1989 aa3.71□□□□□ -1.82
USP40-213ENST00000483216 FRYLO94915 3013 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 VPS13AQ96RL7 3174 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 PTPRZ1P23471 2315 aaPredicted RBP3.7□□□□□ -1.82
USP40-213ENST00000483216 CENPVL3A0A0U1RRI6 287 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 TCRBV4S1A1TA0A5B7 111 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 C12orf77C9JDV5 145 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 FOXH1O75593 365 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 IGLV2-8P01709 118 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 ORM1P02763 201 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 ZNF688P0C7X2 276 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 RPL13AP40429 203 aaKnown RBP3.7□□□□□ -1.82
USP40-213ENST00000483216 MEF2CQ06413 473 aaPredicted RBP3.7□□□□□ -1.82
USP40-213ENST00000483216 PDE6HQ13956 83 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 RRN3P1Q2M238 152 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 C2orf91Q6ZV80 131 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 MIR17HGQ75NE6 70 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 TEN1Q86WV5 123 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 TMEM75Q8N9X5 138 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 HIST1H4GQ99525 98 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 CHAC1Q9BUX1 264 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 ZNF835Q9Y2P0 537 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 CHCHD2Q9Y6H1 151 aaPredicted RBP3.7□□□□□ -1.82
USP40-213ENST00000483216 CACNA1HO95180 2353 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 USP34Q70CQ2 3546 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 SDK1Q7Z5N4 2213 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 FREM3P0C091 2139 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 PI4KAP42356 2102 aa3.7□□□□□ -1.82
USP40-213ENST00000483216 CACNA1CQ13936 2221 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 ASCC3Q8N3C0 2202 aaKnown RBP3.69□□□□□ -1.82
USP40-213ENST00000483216 C19orf71A6NCJ1 209 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 PGPA6NDG6 321 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 C17orf98A8MV24 154 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 IQCF6A8MYZ5 107 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 GGTLC3B5MD39 225 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 IGLL5B9A064 214 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 FCN3O75636 299 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 COX6CP09669 75 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 FGF6P10767 208 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 SLC25A16P16260 332 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 FCER1GP30273 86 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 CKS2P33552 79 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 CFHR2P36980 270 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 UQCRFS1P47985 274 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 VMA21Q3ZAQ7 101 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 ORMDL2Q53FV1 153 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 GCSAMLQ5JQS6 135 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 GUSBP11Q6P575 273 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 ZCCHC24Q8N2G6 241 aaKnown RBP3.69□□□□□ -1.82
USP40-213ENST00000483216 OR8A1Q8NGG7 326 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 UBALD1Q8TB05 177 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 COPS9Q8WXC6 57 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 PRELID3AQ96N28 172 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 TRGV9Q99603 122 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 U3KQK5 164 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 KMT2EQ8IZD2 1858 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 CPAMD8Q8IZJ3 1885 aa3.69□□□□□ -1.82
USP40-213ENST00000483216 TNRC6BQ9UPQ9 1833 aaKnown RBP3.68□□□□□ -1.82
USP40-213ENST00000483216 ALPK2Q86TB3 2170 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.68□□□□□ -1.82
USP40-213ENST00000483216 TRAV12-1A0A0B4J245 112 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 A0A0J9YW62 118 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 IGHV5-10-1A0A0J9YXX1 117 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 FAM240AA0A1B0GVK7 77 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 LINC01546A6NGU7 62 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 UPK2O00526 184 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 TCRAP04437 139 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 COL8A2P25067 703 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 C12orf74Q32Q52 190 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 ETDBQ3ZM63 59 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 C5orf47Q569G3 176 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 CASC10Q5T4H9 136 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms