RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 NIPBLQ6KC79 2804 aaeCLIP5.48□□□□□ -1.53
COL28A1-202ENST00000430711 MUC4Q99102 2169 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 VSTM5A8MXK1 200 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 SAA4P35542 130 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 PDE6HQ13956 83 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 LGALS9BQ3B8N2 356 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 LGALS9CQ6DKI2 356 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 UNQ9165/PRO28630Q6UXU0 137 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 C12orf54Q6X4T0 127 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 Q6ZS46 218 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 MTURNQ8N3F0 131 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 TMEM158Q8WZ71 300 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 SPOCK3Q9BQ16 436 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 RAB1BQ9H0U4 201 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 F6UB75 175 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 HIST2H2BCQ6DN03 193 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 COX8CQ7Z4L0 72 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 GPHB5Q86YW7 130 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 NRACQ8N912 160 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 RNF5Q99942 180 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 POLQO75417 2590 aa5.48□□□□□ -1.53
COL28A1-202ENST00000430711 C19orf84I3L1E1 186 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 RPL7P18124 248 aaKnown RBP5.47□□□□□ -1.53
COL28A1-202ENST00000430711 NEGR1Q7Z3B1 354 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 WFDC12Q8WWY7 111 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 FOXC2Q99958 501 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 SRSF8Q9BRL6 282 aaKnown RBP5.47□□□□□ -1.53
COL28A1-202ENST00000430711 KLK15Q9H2R5 256 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 USP9YO00507 2555 aaPredicted RBP5.47□□□□□ -1.53
COL28A1-202ENST00000430711 NBPF19A0A087WUL8 3843 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 IGKV3-7A0A075B6H7 116 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 H3BVH4 76 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 GOSR1O95249 250 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 ZC2HC1BQ5TFG8 222 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 BRD3OSQ6XYD6 125 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 C8orf86Q6ZUL3 223 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 ZNF48Q96MX3 618 aaPredicted RBP5.47□□□□□ -1.53
COL28A1-202ENST00000430711 MEGF9Q9H1U4 602 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 MRPL35Q9NZE8 188 aaKnown RBP5.47□□□□□ -1.53
COL28A1-202ENST00000430711 UFC1Q9Y3C8 167 aa5.47□□□□□ -1.53
COL28A1-202ENST00000430711 TRAV40A0A0B4J280 105 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 A0A0G2JLM5 398 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 A1L4Q6 167 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 C9orf118A6NHY6 69 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 M0R1W7 72 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 EBI3Q14213 229 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 Q6AWC8 147 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 GLMPQ8WWB7 406 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 RPL39LQ96EH5 51 aaKnown RBP5.46□□□□□ -1.54
COL28A1-202ENST00000430711 CNFNQ9BYD5 112 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 BPESC1Q9GZL8 116 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 PRSS29PA6NIE9 313 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 GCSHP23434 173 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 CEACAM3P40198 252 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 FBXL19-AS1Q494R0 122 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 PHLDA1Q8WV24 401 aaPredicted RBP5.46□□□□□ -1.54
COL28A1-202ENST00000430711 VPS25Q9BRG1 176 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 ZMAT4Q9H898 229 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 PEF1Q9UBV8 284 aaKnown RBP5.46□□□□□ -1.54
COL28A1-202ENST00000430711 CSPG4Q6UVK1 2322 aa5.46□□□□□ -1.54
COL28A1-202ENST00000430711 DNHD1Q96M86 4753 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 SORL1Q92673 2214 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 A0A1B0GW15 77 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 GAGE10A6NGK3 116 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 FABP5P3A8MUU1 101 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 PPBPP02775 128 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 SRD5A1P18405 259 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 SAPCD1Q5SSQ6 148 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 FAM110DQ8TAY7 271 aaPredicted RBP5.45□□□□□ -1.54
COL28A1-202ENST00000430711 MAP1LC3AQ9H492 121 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 TMEM160Q9NX00 188 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 TRBV25-1A0A075B6N4 114 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 IGHV3-11P01762 117 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 PRSS1P07477 247 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 SMIM17P0DL12 118 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 FCER1GP30273 86 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 PIFOQ8TCI5 191 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 CHAC1Q9BUX1 264 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 JPT2Q9H910 190 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 UBTD1Q9HAC8 227 aa5.45□□□□□ -1.54
COL28A1-202ENST00000430711 LRRK2Q5S007 2527 aa5.44□□□□□ -1.54
COL28A1-202ENST00000430711 LINC01546A6NGU7 62 aa5.44□□□□□ -1.54
COL28A1-202ENST00000430711 H3BRM9 83 aa5.44□□□□□ -1.54
COL28A1-202ENST00000430711 K7EP34 96 aa5.44□□□□□ -1.54
COL28A1-202ENST00000430711 LMO4P61968 165 aa5.44□□□□□ -1.54
COL28A1-202ENST00000430711 HSD52Q0P140 79 aa5.44□□□□□ -1.54
COL28A1-202ENST00000430711 TIMD4Q96H15 378 aa5.44□□□□□ -1.54
COL28A1-202ENST00000430711 CENPVL3A0A0U1RRI6 287 aa5.43□□□□□ -1.54
COL28A1-202ENST00000430711 A0A1W2PPM0 123 aa5.43□□□□□ -1.54
COL28A1-202ENST00000430711 M0R381 172 aa5.43□□□□□ -1.54
COL28A1-202ENST00000430711 GNRH2O43555 120 aa5.43□□□□□ -1.54
COL28A1-202ENST00000430711 EMP1P54849 157 aa5.43□□□□□ -1.54
COL28A1-202ENST00000430711 SEC11AP67812 179 aa5.43□□□□□ -1.54
COL28A1-202ENST00000430711 TMEM95Q3KNT9 176 aa5.43□□□□□ -1.54
COL28A1-202ENST00000430711 AMTNQ6UX39 209 aa5.43□□□□□ -1.54
COL28A1-202ENST00000430711 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.43□□□□□ -1.54
COL28A1-202ENST00000430711 IGKCP01834 107 aa5.43□□□□□ -1.54
COL28A1-202ENST00000430711 BMI1P35226 326 aa5.43□□□□□ -1.54
COL28A1-202ENST00000430711 LY6EQ16553 131 aa5.43□□□□□ -1.54
COL28A1-202ENST00000430711 C10orf99Q6UWK7 81 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms