RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 Q9H8V8 135 aa12.1□□□□□ -0.47
PTPRF-206ENST00000429895 ETDCA0A1B0GVM5 59 aa12.1□□□□□ -0.47
PTPRF-206ENST00000429895 H3BUA1 57 aa12.1□□□□□ -0.47
PTPRF-206ENST00000429895 PTPRDP23468 1912 aa12.1□□□□□ -0.47
PTPRF-206ENST00000429895 CCL18P55774 89 aa12.09□□□□□ -0.47
PTPRF-206ENST00000429895 CAMK2N2Q96S95 79 aa12.09□□□□□ -0.47
PTPRF-206ENST00000429895 NBL1P41271 181 aa12.09□□□□□ -0.47
PTPRF-206ENST00000429895 ICOSQ9Y6W8 199 aa12.09□□□□□ -0.47
PTPRF-206ENST00000429895 F8VRH5 84 aa12.09□□□□□ -0.47
PTPRF-206ENST00000429895 TRAV4A0A0B4J268 109 aa12.09□□□□□ -0.47
PTPRF-206ENST00000429895 LGALS9BQ3B8N2 356 aa12.08□□□□□ -0.47
PTPRF-206ENST00000429895 LGALS9CQ6DKI2 356 aa12.08□□□□□ -0.47
PTPRF-206ENST00000429895 PRB2P02812 416 aaPredicted RBP12.08□□□□□ -0.48
PTPRF-206ENST00000429895 Q6ZWC4 215 aa12.08□□□□□ -0.48
PTPRF-206ENST00000429895 AGPAT4-IT1Q9H0P7 198 aa12.08□□□□□ -0.48
PTPRF-206ENST00000429895 THSD7BQ9C0I4 1608 aa12.08□□□□□ -0.48
PTPRF-206ENST00000429895 DIDO1Q9BTC0 2240 aaKnown RBP12.08□□□□□ -0.48
PTPRF-206ENST00000429895 EGR2P11161 476 aaPredicted RBP12.08□□□□□ -0.48
PTPRF-206ENST00000429895 PPDPFLQ8WWR9 84 aa12.08□□□□□ -0.48
PTPRF-206ENST00000429895 PYGO2Q9BRQ0 406 aa12.08□□□□□ -0.48
PTPRF-206ENST00000429895 C20orf78Q9BR46 151 aa12.07□□□□□ -0.48
PTPRF-206ENST00000429895 FAM231DQ6ZW35 169 aa12.07□□□□□ -0.48
PTPRF-206ENST00000429895 WT1P19544 449 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-206ENST00000429895 MAJINQ3KP22 176 aa12.07□□□□□ -0.48
PTPRF-206ENST00000429895 C15orf53Q8NAA6 179 aa12.07□□□□□ -0.48
PTPRF-206ENST00000429895 USF3Q68DE3 2245 aa12.07□□□□□ -0.48
PTPRF-206ENST00000429895 DEFB4AO15263 64 aa12.07□□□□□ -0.48
PTPRF-206ENST00000429895 IGLC2P0DOY2 106 aa12.07□□□□□ -0.48
PTPRF-206ENST00000429895 IGLC3P0DOY3 106 aa12.07□□□□□ -0.48
PTPRF-206ENST00000429895 SLC25A29Q8N8R3 303 aa12.07□□□□□ -0.48
PTPRF-206ENST00000429895 C1orf147Q96MC9 270 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-206ENST00000429895 TRACP01848 142 aa12.07□□□□□ -0.48
PTPRF-206ENST00000429895 COX8AP10176 69 aa12.07□□□□□ -0.48
PTPRF-206ENST00000429895 BLCAPP62952 87 aa12.07□□□□□ -0.48
PTPRF-206ENST00000429895 ETDBQ3ZM63 59 aa12.07□□□□□ -0.48
PTPRF-206ENST00000429895 PIP4P1Q86T03 277 aa12.06□□□□□ -0.48
PTPRF-206ENST00000429895 ETV2O00321 342 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-206ENST00000429895 CFPP27918 469 aa12.06□□□□□ -0.48
PTPRF-206ENST00000429895 SRSF2Q01130 221 aaKnown RBP12.06□□□□□ -0.48
PTPRF-206ENST00000429895 CENPVL3A0A0U1RRI6 287 aa12.06□□□□□ -0.48
PTPRF-206ENST00000429895 LTAP01374 205 aa12.06□□□□□ -0.48
PTPRF-206ENST00000429895 SPART-AS1P0CW21 52 aa12.06□□□□□ -0.48
PTPRF-206ENST00000429895 IGLL1P15814 213 aa12.06□□□□□ -0.48
PTPRF-206ENST00000429895 GATA1P15976 413 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-206ENST00000429895 KAAG1Q9UBP8 84 aa12.06□□□□□ -0.48
PTPRF-206ENST00000429895 C16orf74Q96GX8 76 aa12.06□□□□□ -0.48
PTPRF-206ENST00000429895 K7EQD1 137 aa12.05□□□□□ -0.48
PTPRF-206ENST00000429895 RSPO1Q2MKA7 263 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-206ENST00000429895 AJUBAQ96IF1 538 aa12.05□□□□□ -0.48
PTPRF-206ENST00000429895 ATP6V0E2Q8NHE4 81 aa12.05□□□□□ -0.48
PTPRF-206ENST00000429895 IGLC7A0M8Q6 106 aa12.05□□□□□ -0.48
PTPRF-206ENST00000429895 ATP5G1P05496 136 aa12.05□□□□□ -0.48
PTPRF-206ENST00000429895 MRPL23Q16540 153 aaKnown RBP12.05□□□□□ -0.48
PTPRF-206ENST00000429895 RPL39LQ96EH5 51 aaKnown RBP12.05□□□□□ -0.48
PTPRF-206ENST00000429895 RITA1Q96K30 269 aa12.05□□□□□ -0.48
PTPRF-206ENST00000429895 BVES-AS1Q5T3Y7 98 aa12.04□□□□□ -0.48
PTPRF-206ENST00000429895 VWA8A3KMH1 1905 aa12.04□□□□□ -0.48
PTPRF-206ENST00000429895 H3BMG7 143 aa12.04□□□□□ -0.48
PTPRF-206ENST00000429895 CRYBA4P53673 196 aa12.04□□□□□ -0.48
PTPRF-206ENST00000429895 ORMDL1Q9P0S3 153 aa12.04□□□□□ -0.48
PTPRF-206ENST00000429895 NPBQ8NG41 125 aa12.04□□□□□ -0.48
PTPRF-206ENST00000429895 ACACAQ13085 2346 aa12.04□□□□□ -0.48
PTPRF-206ENST00000429895 K7EN84 100 aa12.04□□□□□ -0.48
PTPRF-206ENST00000429895 FNDC1Q4ZHG4 1894 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-206ENST00000429895 MRPL52Q86TS9 123 aaKnown RBP12.03□□□□□ -0.48
PTPRF-206ENST00000429895 AMTNQ6UX39 209 aa12.03□□□□□ -0.48
PTPRF-206ENST00000429895 IGHV4OR15-8A0A075B7B6 117 aa12.03□□□□□ -0.48
PTPRF-206ENST00000429895 A0A087WW49 117 aa12.03□□□□□ -0.48
PTPRF-206ENST00000429895 BAALC-AS2P0C853 105 aa12.02□□□□□ -0.48
PTPRF-206ENST00000429895 SLX1AQ9BQ83 275 aa12.02□□□□□ -0.48
PTPRF-206ENST00000429895 C20orf144Q9BQM9 153 aa12.02□□□□□ -0.48
PTPRF-206ENST00000429895 IFITM1P13164 125 aa12.02□□□□□ -0.48
PTPRF-206ENST00000429895 C5orf47Q569G3 176 aa12.02□□□□□ -0.48
PTPRF-206ENST00000429895 WIPF2Q8TF74 440 aaPredicted RBP12.02□□□□□ -0.48
PTPRF-206ENST00000429895 WDR81Q562E7 1941 aa12.02□□□□□ -0.49
PTPRF-206ENST00000429895 F8W1H4 67 aa12.02□□□□□ -0.49
PTPRF-206ENST00000429895 K7EP34 96 aa12.02□□□□□ -0.49
PTPRF-206ENST00000429895 NCR3O14931 201 aa12.02□□□□□ -0.49
PTPRF-206ENST00000429895 UBE2AP49459 152 aa12.02□□□□□ -0.49
PTPRF-206ENST00000429895 CHKB-CPT1BH3BT56 60 aa12.02□□□□□ -0.49
PTPRF-206ENST00000429895 COX7A2LO14548 114 aa12.01□□□□□ -0.49
PTPRF-206ENST00000429895 A0A1W2PPM0 123 aa12.01□□□□□ -0.49
PTPRF-206ENST00000429895 ZNF493Q6ZR52 646 aa12.01□□□□□ -0.49
PTPRF-206ENST00000429895 ANKRD29Q8N6D5 301 aa12.01□□□□□ -0.49
PTPRF-206ENST00000429895 KIAA1671Q9BY89 1806 aa12.01□□□□□ -0.49
PTPRF-206ENST00000429895 HIST2H2BCQ6DN03 193 aa12.01□□□□□ -0.49
PTPRF-206ENST00000429895 KLF2Q9Y5W3 355 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-206ENST00000429895 ABCA1O95477 2261 aa12.01□□□□□ -0.49
PTPRF-206ENST00000429895 IGHV7-81A0A0B4J1V7 117 aa12.01□□□□□ -0.49
PTPRF-206ENST00000429895 COX7B2Q8TF08 81 aa12.01□□□□□ -0.49
PTPRF-206ENST00000429895 NTN5Q8WTR8 489 aaPredicted RBP12□□□□□ -0.49
PTPRF-206ENST00000429895 DOCK8Q8NF50 2099 aa12□□□□□ -0.49
PTPRF-206ENST00000429895 DEFB135Q30KP9 77 aa12□□□□□ -0.49
PTPRF-206ENST00000429895 C11orf53Q8IXP5 236 aa12□□□□□ -0.49
PTPRF-206ENST00000429895 C12orf74Q32Q52 190 aa11.99□□□□□ -0.49
PTPRF-206ENST00000429895 PKIGQ9Y2B9 76 aa11.99□□□□□ -0.49
PTPRF-206ENST00000429895 PRR20EP86478 221 aa11.99□□□□□ -0.49
PTPRF-206ENST00000429895 PRR20CP86479 221 aa11.99□□□□□ -0.49
PTPRF-206ENST00000429895 PRR20DP86480 221 aa11.99□□□□□ -0.49
PTPRF-206ENST00000429895 PRR20BP86481 221 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms