RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 FLI1Q01543 452 aaPredicted RBP19.89■□□□□ 0.77
HMGB1-205ENST00000399494 ANXA2RQ3ZCQ2 193 aa19.89■□□□□ 0.77
HMGB1-205ENST00000399494 Q6AWC8 147 aa19.89■□□□□ 0.77
HMGB1-205ENST00000399494 TMEM75Q8N9X5 138 aa19.89■□□□□ 0.77
HMGB1-205ENST00000399494 PSG8Q9UQ74 426 aa19.89■□□□□ 0.77
HMGB1-205ENST00000399494 FBLL1A6NHQ2 334 aaKnown RBP19.88■□□□□ 0.77
HMGB1-205ENST00000399494 CDK2AP2O75956 126 aa19.88■□□□□ 0.77
HMGB1-205ENST00000399494 MUC21Q5SSG8 566 aa19.88■□□□□ 0.77
HMGB1-205ENST00000399494 CST9LP1Q5W188 147 aa19.88■□□□□ 0.77
HMGB1-205ENST00000399494 PRNTQ86SH4 94 aa19.88■□□□□ 0.77
HMGB1-205ENST00000399494 PPT1P50897 306 aa19.87■□□□□ 0.77
HMGB1-205ENST00000399494 RAB5CP51148 216 aa19.87■□□□□ 0.77
HMGB1-205ENST00000399494 FAM159AQ6UWV7 190 aa19.87■□□□□ 0.77
HMGB1-205ENST00000399494 C9orf62Q8N4C0 152 aa19.87■□□□□ 0.77
HMGB1-205ENST00000399494 TVP23CQ96ET8 276 aa19.87■□□□□ 0.77
HMGB1-205ENST00000399494 GSN-AS1Q9NRJ2 163 aa19.87■□□□□ 0.77
HMGB1-205ENST00000399494 NAGKQ9UJ70 344 aa19.87■□□□□ 0.77
HMGB1-205ENST00000399494 LINC00588Q9Y4M8 146 aa19.87■□□□□ 0.77
HMGB1-205ENST00000399494 PEX7O00628 323 aa19.86■□□□□ 0.77
HMGB1-205ENST00000399494 CCL18P55774 89 aa19.86■□□□□ 0.77
HMGB1-205ENST00000399494 TP53TG3Q9ULZ0 132 aa19.86■□□□□ 0.77
HMGB1-205ENST00000399494 LRP1BQ9NZR2 4599 aa19.85■□□□□ 0.77
HMGB1-205ENST00000399494 TRAV21A0A0B4J279 112 aa19.85■□□□□ 0.77
HMGB1-205ENST00000399494 C11orf72Q8NBR9 251 aa19.85■□□□□ 0.77
HMGB1-205ENST00000399494 HIST1H2BAQ96A08 127 aa19.85■□□□□ 0.77
HMGB1-205ENST00000399494 ARL2-SNX15V9GYD0 113 aa19.85■□□□□ 0.77
HMGB1-205ENST00000399494 PAGE4O60829 102 aa19.84■□□□□ 0.77
HMGB1-205ENST00000399494 IGLV2-11P01706 119 aa19.84■□□□□ 0.77
HMGB1-205ENST00000399494 DAZ2Q13117 558 aaKnown RBP19.84■□□□□ 0.77
HMGB1-205ENST00000399494 IBA57Q5T440 356 aaKnown RBP19.84■□□□□ 0.77
HMGB1-205ENST00000399494 C8orf49Q96NF6 230 aa19.84■□□□□ 0.77
HMGB1-205ENST00000399494 TRAV34A0A0B4J273 112 aa19.83■□□□□ 0.77
HMGB1-205ENST00000399494 GAGE12BA1L429 117 aa19.83■□□□□ 0.77
HMGB1-205ENST00000399494 GAGE7O76087 117 aa19.83■□□□□ 0.77
HMGB1-205ENST00000399494 GAGE12FP0CL80 117 aa19.83■□□□□ 0.77
HMGB1-205ENST00000399494 GAGE12GP0CL81 117 aa19.83■□□□□ 0.77
HMGB1-205ENST00000399494 GAGE12IP0CL82 117 aa19.83■□□□□ 0.77
HMGB1-205ENST00000399494 ZNF415Q09FC8 603 aa19.83■□□□□ 0.77
HMGB1-205ENST00000399494 SAPCD1Q5SSQ6 148 aa19.83■□□□□ 0.77
HMGB1-205ENST00000399494 LINC00479Q96M42 142 aa19.83■□□□□ 0.77
HMGB1-205ENST00000399494 SULT1A2P50226 295 aa19.82■□□□□ 0.76
HMGB1-205ENST00000399494 TCL1AP56279 114 aa19.82■□□□□ 0.76
HMGB1-205ENST00000399494 TEX46H3BTG2 121 aa19.81■□□□□ 0.76
HMGB1-205ENST00000399494 SMUG1Q53HV7 270 aa19.81■□□□□ 0.76
HMGB1-205ENST00000399494 MAPKAPK5-AS1Q8N8E1 139 aa19.81■□□□□ 0.76
HMGB1-205ENST00000399494 TCEAL7Q9BRU2 100 aa19.81■□□□□ 0.76
HMGB1-205ENST00000399494 KLF12Q9Y4X4 402 aa19.81■□□□□ 0.76
HMGB1-205ENST00000399494 TRGV11A0A075B6L2 103 aa19.8■□□□□ 0.76
HMGB1-205ENST00000399494 GCGP01275 180 aa19.8■□□□□ 0.76
HMGB1-205ENST00000399494 UBE2G1P62253 170 aa19.8■□□□□ 0.76
HMGB1-205ENST00000399494 TMEM183BQ1AE95 376 aa19.8■□□□□ 0.76
HMGB1-205ENST00000399494 Q6ZTI0 123 aa19.8■□□□□ 0.76
HMGB1-205ENST00000399494 TMEM183AQ8IXX5 376 aa19.8■□□□□ 0.76
HMGB1-205ENST00000399494 TRGV1A0A0A0MS02 117 aa19.79■□□□□ 0.76
HMGB1-205ENST00000399494 LINC00612Q8N6U2 182 aa19.79■□□□□ 0.76
HMGB1-205ENST00000399494 Q86TA4 180 aa19.78■□□□□ 0.76
HMGB1-205ENST00000399494 FMC1Q96HJ9 113 aa19.78■□□□□ 0.76
HMGB1-205ENST00000399494 Q9H8V8 135 aa19.78■□□□□ 0.76
HMGB1-205ENST00000399494 TRGV2A0A075B6R0 118 aa19.77■□□□□ 0.76
HMGB1-205ENST00000399494 AKR1C3P42330 323 aa19.77■□□□□ 0.76
HMGB1-205ENST00000399494 KCNS1Q96KK3 526 aa19.77■□□□□ 0.76
HMGB1-205ENST00000399494 SDF2L1Q9HCN8 221 aa19.77■□□□□ 0.76
HMGB1-205ENST00000399494 ZNF80P51504 273 aaPredicted RBP19.76■□□□□ 0.75
HMGB1-205ENST00000399494 NKX2-5P52952 324 aaPredicted RBP19.76■□□□□ 0.75
HMGB1-205ENST00000399494 TDRG1Q3Y452 100 aa19.76■□□□□ 0.75
HMGB1-205ENST00000399494 MANBALQ9NQG1 85 aa19.76■□□□□ 0.75
HMGB1-205ENST00000399494 GNG13Q9P2W3 67 aa19.76■□□□□ 0.75
HMGB1-205ENST00000399494 TRAV1-1A0A0B4J248 108 aa19.75■□□□□ 0.75
HMGB1-205ENST00000399494 SPINK4O60575 86 aa19.75■□□□□ 0.75
HMGB1-205ENST00000399494 PFN1P07737 140 aaKnown RBP19.75■□□□□ 0.75
HMGB1-205ENST00000399494 MRPL16Q9NX20 251 aaKnown RBP19.75■□□□□ 0.75
HMGB1-205ENST00000399494 MDFICQ9P1T7 246 aa19.75■□□□□ 0.75
HMGB1-205ENST00000399494 OR5I1Q13606 314 aa19.74■□□□□ 0.75
HMGB1-205ENST00000399494 GNRH2O43555 120 aa19.73■□□□□ 0.75
HMGB1-205ENST00000399494 CCL20P78556 96 aa19.73■□□□□ 0.75
HMGB1-205ENST00000399494 SPATA12Q7Z6I5 190 aa19.73■□□□□ 0.75
HMGB1-205ENST00000399494 KRTAP1-5Q9BYS1 174 aa19.73■□□□□ 0.75
HMGB1-205ENST00000399494 ZFP30Q9Y2G7 519 aa19.73■□□□□ 0.75
HMGB1-205ENST00000399494 TYMSP04818 313 aa19.72■□□□□ 0.75
HMGB1-205ENST00000399494 Q8N1X5 172 aa19.72■□□□□ 0.75
HMGB1-205ENST00000399494 SPXQ9BT56 116 aa19.72■□□□□ 0.75
HMGB1-205ENST00000399494 TRAV26-1A0A087WT03 109 aa19.71■□□□□ 0.75
HMGB1-205ENST00000399494 SCO2A0A1W2PP80 73 aa19.71■□□□□ 0.75
HMGB1-205ENST00000399494 APOBP04114 4563 aaKnown RBP19.71■□□□□ 0.75
HMGB1-205ENST00000399494 ALKAL2Q6UX46 152 aa19.7■□□□□ 0.74
HMGB1-205ENST00000399494 DNAH5Q8TE73 4624 aa19.7■□□□□ 0.74
HMGB1-205ENST00000399494 IGHV3-16A0A0C4DH30 117 aa19.69■□□□□ 0.74
HMGB1-205ENST00000399494 TRBV6-1A0A0K0K1D8 114 aa19.69■□□□□ 0.74
HMGB1-205ENST00000399494 IFNA1P01562 189 aa19.69■□□□□ 0.74
HMGB1-205ENST00000399494 S100A9P06702 114 aaKnown RBP19.69■□□□□ 0.74
HMGB1-205ENST00000399494 HOXA5P20719 270 aa19.69■□□□□ 0.74
HMGB1-205ENST00000399494 ESRGQ1W209 222 aa19.69■□□□□ 0.74
HMGB1-205ENST00000399494 C18orf15Q96N68 181 aa19.69■□□□□ 0.74
HMGB1-205ENST00000399494 A0A0J9YY99 117 aa19.68■□□□□ 0.74
HMGB1-205ENST00000399494 FABP5P3A8MUU1 101 aa19.68■□□□□ 0.74
HMGB1-205ENST00000399494 TTC32Q5I0X7 151 aa19.68■□□□□ 0.74
HMGB1-205ENST00000399494 UPK3BQ9BT76 320 aa19.68■□□□□ 0.74
HMGB1-205ENST00000399494 C11orf21Q9P2W6 132 aa19.68■□□□□ 0.74
HMGB1-205ENST00000399494 LTAP01374 205 aa19.67■□□□□ 0.74
HMGB1-205ENST00000399494 ZC2HC1AQ96GY0 325 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms