RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 RBAKDNA6NC62 111 aa12.72□□□□□ -0.37
SHANK1-204ENST00000391814 PHF3Q92576 2039 aaKnown RBP12.72□□□□□ -0.37
SHANK1-204ENST00000391814 APC2O95996 2303 aa12.72□□□□□ -0.37
SHANK1-204ENST00000391814 TRBV10-2A0A0K0K1G8 114 aa12.72□□□□□ -0.37
SHANK1-204ENST00000391814 LGALS9O00182 355 aa12.72□□□□□ -0.37
SHANK1-204ENST00000391814 RHOHQ15669 191 aa12.72□□□□□ -0.37
SHANK1-204ENST00000391814 FANCMQ8IYD8 2048 aa12.71□□□□□ -0.37
SHANK1-204ENST00000391814 SVILO95425 2214 aa12.71□□□□□ -0.37
SHANK1-204ENST00000391814 RSPO1Q2MKA7 263 aaPredicted RBP12.71□□□□□ -0.37
SHANK1-204ENST00000391814 NDUFV3P56181 108 aaKnown RBP12.71□□□□□ -0.38
SHANK1-204ENST00000391814 HELZP42694 1942 aaKnown RBP12.71□□□□□ -0.38
SHANK1-204ENST00000391814 MSRB1Q9NZV6 116 aa12.7□□□□□ -0.38
SHANK1-204ENST00000391814 SCN5AQ14524 2016 aa12.7□□□□□ -0.38
SHANK1-204ENST00000391814 ZNF491Q8N8L2 437 aa12.7□□□□□ -0.38
SHANK1-204ENST00000391814 COX7B2Q8TF08 81 aa12.7□□□□□ -0.38
SHANK1-204ENST00000391814 TMEM61Q8N0U2 210 aa12.7□□□□□ -0.38
SHANK1-204ENST00000391814 E7EQL1 145 aa12.69□□□□□ -0.38
SHANK1-204ENST00000391814 UBE2BP63146 152 aa12.69□□□□□ -0.38
SHANK1-204ENST00000391814 SLC25A29Q8N8R3 303 aa12.69□□□□□ -0.38
SHANK1-204ENST00000391814 MBD3L4A6NDZ8 208 aaPredicted RBP12.69□□□□□ -0.38
SHANK1-204ENST00000391814 MBD3L3A6NE82 208 aaPredicted RBP12.69□□□□□ -0.38
SHANK1-204ENST00000391814 MBD3L5A6NJ08 208 aaPredicted RBP12.69□□□□□ -0.38
SHANK1-204ENST00000391814 MBD3L2Q8NHZ7 208 aaPredicted RBP12.69□□□□□ -0.38
SHANK1-204ENST00000391814 IGLV3-1P01715 115 aa12.69□□□□□ -0.38
SHANK1-204ENST00000391814 TCL1BO95988 128 aa12.69□□□□□ -0.38
SHANK1-204ENST00000391814 PLXNA4Q9HCM2 1894 aa12.69□□□□□ -0.38
SHANK1-204ENST00000391814 XCL1P47992 114 aa12.69□□□□□ -0.38
SHANK1-204ENST00000391814 TNRC6BQ9UPQ9 1833 aaKnown RBP12.68□□□□□ -0.38
SHANK1-204ENST00000391814 NDUFA4O00483 81 aa12.68□□□□□ -0.38
SHANK1-204ENST00000391814 C22orf46C9J442 243 aa12.68□□□□□ -0.38
SHANK1-204ENST00000391814 TP73-AS1Q9UF72 201 aa12.68□□□□□ -0.38
SHANK1-204ENST00000391814 CACNA1IQ9P0X4 2223 aa12.68□□□□□ -0.38
SHANK1-204ENST00000391814 RNF166Q96A37 237 aaPredicted RBP12.68□□□□□ -0.38
SHANK1-204ENST00000391814 MRPL53Q96EL3 112 aaKnown RBP12.68□□□□□ -0.38
SHANK1-204ENST00000391814 CACNA1DQ01668 2161 aa12.68□□□□□ -0.38
SHANK1-204ENST00000391814 Q8TCH9 128 aa12.68□□□□□ -0.38
SHANK1-204ENST00000391814 PLXNA2O75051 1894 aa12.67□□□□□ -0.38
SHANK1-204ENST00000391814 TOMM6Q96B49 74 aa12.67□□□□□ -0.38
SHANK1-204ENST00000391814 LINC01619G3V211 115 aa12.67□□□□□ -0.38
SHANK1-204ENST00000391814 ANGP03950 147 aaKnown RBP12.67□□□□□ -0.38
SHANK1-204ENST00000391814 DOCK6Q96HP0 2047 aa12.67□□□□□ -0.38
SHANK1-204ENST00000391814 C17orf82Q86X59 251 aaPredicted RBP12.67□□□□□ -0.38
SHANK1-204ENST00000391814 SRSF2Q01130 221 aaKnown RBP12.66□□□□□ -0.38
SHANK1-204ENST00000391814 GP9P14770 177 aa12.66□□□□□ -0.38
SHANK1-204ENST00000391814 C14orf132Q9NPU4 83 aa12.66□□□□□ -0.38
SHANK1-204ENST00000391814 IGKV1OR2-108A0A075B7D4 117 aa12.66□□□□□ -0.38
SHANK1-204ENST00000391814 MPLKIPQ8TAP9 179 aa12.66□□□□□ -0.38
SHANK1-204ENST00000391814 AGPAT4-IT1Q9H0P7 198 aa12.66□□□□□ -0.38
SHANK1-204ENST00000391814 RBX1P62877 108 aa12.65□□□□□ -0.38
SHANK1-204ENST00000391814 RPL39P62891 51 aaKnown RBP12.65□□□□□ -0.38
SHANK1-204ENST00000391814 SPATA25Q9BR10 227 aa12.65□□□□□ -0.38
SHANK1-204ENST00000391814 ESPL1Q14674 2120 aa12.65□□□□□ -0.38
SHANK1-204ENST00000391814 BRWD3Q6RI45 1802 aa12.65□□□□□ -0.38
SHANK1-204ENST00000391814 HEATR5AQ86XA9 2040 aa12.65□□□□□ -0.38
SHANK1-204ENST00000391814 COL4A6Q14031 1691 aa12.65□□□□□ -0.38
SHANK1-204ENST00000391814 DOCK3Q8IZD9 2030 aa12.65□□□□□ -0.38
SHANK1-204ENST00000391814 A0A0J9YY99 117 aa12.65□□□□□ -0.38
SHANK1-204ENST00000391814 A0A0U1RQV1 116 aa12.65□□□□□ -0.38
SHANK1-204ENST00000391814 BPESC1Q9GZL8 116 aa12.65□□□□□ -0.38
SHANK1-204ENST00000391814 TRAV4A0A0B4J268 109 aa12.65□□□□□ -0.39
SHANK1-204ENST00000391814 B4DSR2 109 aa12.65□□□□□ -0.39
SHANK1-204ENST00000391814 IGLV2-23P01705 113 aa12.65□□□□□ -0.39
SHANK1-204ENST00000391814 SPANXB1Q9NS25 103 aaPredicted RBP12.65□□□□□ -0.39
SHANK1-204ENST00000391814 VWA8A3KMH1 1905 aa12.64□□□□□ -0.39
SHANK1-204ENST00000391814 Q6ZQT7 251 aa12.64□□□□□ -0.39
SHANK1-204ENST00000391814 NCR3O14931 201 aa12.64□□□□□ -0.39
SHANK1-204ENST00000391814 ALPK2Q86TB3 2170 aa12.64□□□□□ -0.39
SHANK1-204ENST00000391814 LOXP28300 417 aaPredicted RBP12.64□□□□□ -0.39
SHANK1-204ENST00000391814 SND1-IT1Q9HBX3 110 aa12.64□□□□□ -0.39
SHANK1-204ENST00000391814 IGHV7-4-1A0A0J9YVY3 117 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 CRIPAKQ8N1N5 446 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 IGFBPL1Q8WX77 278 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 PROK2Q9HC23 129 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 IGHV1-69DA0A0B4J2H0 117 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 E9PLD3 99 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 UBE2E1P51965 193 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 LINC00311Q8N616 119 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 Q9HAA7 133 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 A0A0J9YXV3 536 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 ODF1Q14990 250 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 IGKV2D-24A0A075B6R9 120 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 C8orf31Q8N9H6 132 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 RPL18AQ02543 176 aaKnown RBP12.63□□□□□ -0.39
SHANK1-204ENST00000391814 TIMM17AQ99595 171 aa12.63□□□□□ -0.39
SHANK1-204ENST00000391814 NDUFA11Q86Y39 141 aa12.62□□□□□ -0.39
SHANK1-204ENST00000391814 RITA1Q96K30 269 aa12.62□□□□□ -0.39
SHANK1-204ENST00000391814 DOCK9Q9BZ29 2069 aa12.62□□□□□ -0.39
SHANK1-204ENST00000391814 PLA2G5P39877 138 aa12.62□□□□□ -0.39
SHANK1-204ENST00000391814 MGAMO43451 1857 aa12.62□□□□□ -0.39
SHANK1-204ENST00000391814 NLRC5Q86WI3 1866 aa12.62□□□□□ -0.39
SHANK1-204ENST00000391814 PATE2Q6UY27 113 aa12.62□□□□□ -0.39
SHANK1-204ENST00000391814 RNF223E7ERA6 249 aa12.61□□□□□ -0.39
SHANK1-204ENST00000391814 DSCR9P59020 149 aa12.61□□□□□ -0.39
SHANK1-204ENST00000391814 PKIGQ9Y2B9 76 aa12.61□□□□□ -0.39
SHANK1-204ENST00000391814 TNRC6AQ8NDV7 1962 aaKnown RBP12.61□□□□□ -0.39
SHANK1-204ENST00000391814 KIAA2026Q5HYC2 2103 aa12.6□□□□□ -0.39
SHANK1-204ENST00000391814 U3KQE9 123 aa12.6□□□□□ -0.39
SHANK1-204ENST00000391814 C2orf70A6NJV1 201 aa12.6□□□□□ -0.39
SHANK1-204ENST00000391814 ETV2O00321 342 aaPredicted RBP12.6□□□□□ -0.39
SHANK1-204ENST00000391814 C5orf38Q86SI9 138 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms