RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 COX6A1P12074 109 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 DIRC1Q969H9 104 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 ITGB4P16144 1822 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 IGLV2-14P01704 120 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 CRYGDP07320 174 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 FRMD6-AS1P0C7T7 363 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 COX6B2Q6YFQ2 88 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 NUP35Q8NFH5 326 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 NMBP08949 121 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 ARMS2P0C7Q2 107 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 FAM27BQ5VT28 67 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 APRG1Q8IVJ8 170 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 ADAMTSL1Q8N6G6 1762 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 LY6G6EA0A0G2JKS1 128 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 H2BFSP57053 126 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 C9orf139Q6ZV77 190 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 RNF5Q99942 180 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 SRXN1Q9BYN0 137 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 A0A1W2PPC1 479 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 BUB1B-PAK6H3BSN5 160 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 LGALS9O00182 355 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 ATRAIDQ6UW56 229 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 SMIM8Q96KF7 97 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 Q9H8V8 135 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 TRBV24-1A0A075B6N3 115 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 J3QL48 77 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 GATA3P23771 443 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 SLC25A29Q8N8R3 303 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 TMEM141Q96I45 108 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 SPANXA1Q9NS26 97 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 FAM240AA0A1B0GVK7 77 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 H0YIZ8 118 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 SHISA2Q6UWI4 295 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 SCXQ7RTU7 201 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 MYO9AB2RTY4 2548 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 RICTORQ6R327 1708 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 ABCA3Q99758 1704 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.72□□□□□ -1.81
SCN1A-202ENST00000375405 K7EP34 96 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 BTCP35070 178 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 TRBV19A0A075B6N1 114 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 IGHV1-58A0A0C4DH39 117 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 ATP5G1P05496 136 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 MST1P26927 711 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 RNF152Q8N8N0 203 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 FAM30AQ9NZY2 134 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 HHLA3Q9XRX5 114 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 DOCK1Q14185 1865 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-202ENST00000375405 SRSF2Q01130 221 aaKnown RBP3.72□□□□□ -1.81
SCN1A-202ENST00000375405 HIST2H2BDQ6DRA6 164 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 PRSS57Q6UWY2 283 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 SPATA12Q7Z6I5 190 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 ATP6V0E2Q8NHE4 81 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 PTPRDP23468 1912 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 NOTCH4Q99466 2003 aa3.72□□□□□ -1.81
SCN1A-202ENST00000375405 NRAPQ86VF7 1730 aa3.71□□□□□ -1.81
SCN1A-202ENST00000375405 ALS2Q96Q42 1657 aa3.71□□□□□ -1.81
SCN1A-202ENST00000375405 TRBV5-4A0A0C4DH59 114 aa3.71□□□□□ -1.81
SCN1A-202ENST00000375405 E9PLN8 166 aa3.71□□□□□ -1.81
SCN1A-202ENST00000375405 LYL1P12980 280 aa3.71□□□□□ -1.81
SCN1A-202ENST00000375405 H3BT86 120 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 IFI6P09912 130 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 TUBGCP6Q96RT7 1819 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 IGHV1-3A0A0C4DH29 117 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 CFPP27918 469 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 RPRMLQ8N4K4 120 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 PAQR4Q8N4S7 273 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-202ENST00000375405 C20orf78Q9BR46 151 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 WI2-2373I1.2A0A1W2PRP0 233 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 SHISA3A0PJX4 238 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 NDUFS6O75380 124 aaKnown RBP3.71□□□□□ -1.82
SCN1A-202ENST00000375405 IGLV3-25P01717 112 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 GATA1P15976 413 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-202ENST00000375405 SH2D6Q7Z4S9 175 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 ZFAND3Q9H8U3 227 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 B5MCH6 92 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 RAMP3O60896 148 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 NDUFB8O95169 186 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 TCL1BO95988 128 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 IGHV1-2P23083 117 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 HILS1P60008 231 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 RNF126Q9BV68 326 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 RREB1Q92766 1687 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 ARFGEF1Q9Y6D6 1849 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 FNDC10F2Z333 226 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 RBX1P62877 108 aa3.71□□□□□ -1.82
SCN1A-202ENST00000375405 WISP1O95388 367 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 AMELYQ99218 206 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 C5orf66Q9H5L9 145 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 MINOS1-NBL1R4GNA1 71 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 C9orf106Q8NAJ2 232 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 SND1-IT1Q9HBX3 110 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 POLR3KQ9Y2Y1 108 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-202ENST00000375405 VPREB1P12018 145 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 LDLRAD1Q5T700 205 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 WDR86Q86TI4 376 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 LAMB2P55268 1798 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 SPAG11BQ08648 103 aa3.7□□□□□ -1.82
SCN1A-202ENST00000375405 C12orf74Q32Q52 190 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms