RNA–Protein interactions for RNA: ENST00000355430.4

COLCA1-201, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,442 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-201ENST00000355430 GDF5OSQ5U4N7 250 aa9.64□□□□□ -0.87
COLCA1-201ENST00000355430 NOTCH2Q04721 2471 aa9.64□□□□□ -0.87
COLCA1-201ENST00000355430 LINC01545Q5VT33 79 aa9.64□□□□□ -0.87
COLCA1-201ENST00000355430 DLX4Q92988 240 aaPredicted RBP9.64□□□□□ -0.87
COLCA1-201ENST00000355430 IGKV1-17P01599 117 aa9.63□□□□□ -0.87
COLCA1-201ENST00000355430 RPL36AP83881 106 aaKnown RBP9.63□□□□□ -0.87
COLCA1-201ENST00000355430 DYNAPQ8N1N2 210 aa9.63□□□□□ -0.87
COLCA1-201ENST00000355430 RPL36ALQ969Q0 106 aaKnown RBP9.63□□□□□ -0.87
COLCA1-201ENST00000355430 IGHV3-73A0A0B4J1V6 119 aa9.63□□□□□ -0.87
COLCA1-201ENST00000355430 K7EIM0 57 aa9.63□□□□□ -0.87
COLCA1-201ENST00000355430 DEFB130BP0DP73 79 aa9.63□□□□□ -0.87
COLCA1-201ENST00000355430 DEFB130AP0DP74 79 aa9.63□□□□□ -0.87
COLCA1-201ENST00000355430 ANKRD39Q53RE8 183 aa9.63□□□□□ -0.87
COLCA1-201ENST00000355430 IGKV1D-37A0A075B6S9 117 aa9.63□□□□□ -0.87
COLCA1-201ENST00000355430 VCYO14598 125 aa9.63□□□□□ -0.87
COLCA1-201ENST00000355430 CDKN1BP46527 198 aa9.63□□□□□ -0.87
COLCA1-201ENST00000355430 LGALS1P09382 135 aaKnown RBP9.62□□□□□ -0.87
COLCA1-201ENST00000355430 ERG28Q9UKR5 140 aa9.62□□□□□ -0.87
COLCA1-201ENST00000355430 WNK2Q9Y3S1 2297 aa9.62□□□□□ -0.87
COLCA1-201ENST00000355430 CGB3P0DN86 165 aa9.62□□□□□ -0.87
COLCA1-201ENST00000355430 CGB7P0DN87 165 aa9.62□□□□□ -0.87
COLCA1-201ENST00000355430 GATA1P15976 413 aaPredicted RBP9.62□□□□□ -0.87
COLCA1-201ENST00000355430 C2orf66Q6UXQ4 117 aa9.62□□□□□ -0.87
COLCA1-201ENST00000355430 CEND1Q8N111 149 aa9.62□□□□□ -0.87
COLCA1-201ENST00000355430 NPC2P61916 151 aa9.62□□□□□ -0.87
COLCA1-201ENST00000355430 CFHR4Q92496 578 aa9.62□□□□□ -0.87
COLCA1-201ENST00000355430 COL5A1P20908 1838 aaPredicted RBP9.62□□□□□ -0.87
COLCA1-201ENST00000355430 INS-IGF2F8WCM5 200 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 SIVA1O15304 175 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.61□□□□□ -0.87
COLCA1-201ENST00000355430 C2orf70A6NJV1 201 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 TAX1BP3O14907 124 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 LINC00322Q6ZN03 302 aaPredicted RBP9.61□□□□□ -0.87
COLCA1-201ENST00000355430 WFDC11Q8NEX6 87 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 BPTFQ12830 3046 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 LINC01549A6NIU2 74 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 TEX22C9J3V5 150 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 F5H768 121 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 XCL2Q9UBD3 114 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 MYMXA0A1B0GTQ4 84 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 ZNF876PQ49A33 203 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 TP53TG1Q9Y2A0 90 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 TSPAN13O95857 204 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 NEGR1Q7Z3B1 354 aa9.61□□□□□ -0.87
COLCA1-201ENST00000355430 MSRB1Q9NZV6 116 aa9.6□□□□□ -0.87
COLCA1-201ENST00000355430 C19orf71A6NCJ1 209 aa9.6□□□□□ -0.87
COLCA1-201ENST00000355430 ABCA1O95477 2261 aa9.6□□□□□ -0.87
COLCA1-201ENST00000355430 A0A1B0GXF2 115 aa9.6□□□□□ -0.87
COLCA1-201ENST00000355430 TOMM7Q9P0U1 55 aa9.6□□□□□ -0.87
COLCA1-201ENST00000355430 TP73-AS1Q9UF72 201 aa9.6□□□□□ -0.87
COLCA1-201ENST00000355430 ADARB2-AS1A8MUL3 147 aa9.59□□□□□ -0.87
COLCA1-201ENST00000355430 IGHV3-53P01767 116 aa9.59□□□□□ -0.87
COLCA1-201ENST00000355430 ANXA2RQ3ZCQ2 193 aa9.59□□□□□ -0.87
COLCA1-201ENST00000355430 ANAPC13Q9BS18 74 aa9.59□□□□□ -0.87
COLCA1-201ENST00000355430 PCNTO95613 3336 aa9.59□□□□□ -0.87
COLCA1-201ENST00000355430 MALRD1Q5VYJ5 2156 aa9.59□□□□□ -0.87
COLCA1-201ENST00000355430 INAFM1C9JVW0 142 aa9.59□□□□□ -0.87
COLCA1-201ENST00000355430 TMEM238C9JI98 176 aa9.59□□□□□ -0.87
COLCA1-201ENST00000355430 MYCNOSP40205 109 aa9.59□□□□□ -0.87
COLCA1-201ENST00000355430 SMIM2Q9BVW6 85 aa9.59□□□□□ -0.87
COLCA1-201ENST00000355430 TRAV8-4A0A0B4J246 113 aa9.58□□□□□ -0.88
COLCA1-201ENST00000355430 CKS1BP61024 79 aa9.58□□□□□ -0.88
COLCA1-201ENST00000355430 HIVEP2P31629 2446 aa9.58□□□□□ -0.88
COLCA1-201ENST00000355430 HOXD3P31249 432 aaPredicted RBP9.58□□□□□ -0.88
COLCA1-201ENST00000355430 ETDBQ3ZM63 59 aa9.58□□□□□ -0.88
COLCA1-201ENST00000355430 HIST2H2BCQ6DN03 193 aa9.58□□□□□ -0.88
COLCA1-201ENST00000355430 AGPAT4-IT1Q9H0P7 198 aa9.58□□□□□ -0.88
COLCA1-201ENST00000355430 CACNA1AO00555 2505 aa9.58□□□□□ -0.88
COLCA1-201ENST00000355430 TNRC6AQ8NDV7 1962 aaKnown RBP9.58□□□□□ -0.88
COLCA1-201ENST00000355430 A0A0U1RRA0 63 aa9.58□□□□□ -0.88
COLCA1-201ENST00000355430 Q8N7P7 452 aa9.58□□□□□ -0.88
COLCA1-201ENST00000355430 SPRY2O43597 315 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 HLA-DRB4P13762 266 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 PLEKHB2Q96CS7 222 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 HLA-DRB4X5D2U9 266 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 IGHV7-4-1A0A0J9YVY3 117 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 H3BMG7 143 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 IGLV11-55A0A075B6I3 123 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 F8VRH5 84 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 CRYGCP07315 174 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 IGHV4-31P0DP07 118 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 DNAJC9-AS1A6NH13 148 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 AMTNQ6UX39 209 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 NPBQ8NG41 125 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 OR13C6PQ8NH95 151 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 MBD6Q96DN6 1003 aa9.57□□□□□ -0.88
COLCA1-201ENST00000355430 WI2-2373I1.2A0A1W2PRP0 233 aa9.56□□□□□ -0.88
COLCA1-201ENST00000355430 F8W1H4 67 aa9.56□□□□□ -0.88
COLCA1-201ENST00000355430 CTRLP40313 264 aa9.56□□□□□ -0.88
COLCA1-201ENST00000355430 CEP350Q5VT06 3117 aa9.56□□□□□ -0.88
COLCA1-201ENST00000355430 DOPEY2Q9Y3R5 2298 aa9.56□□□□□ -0.88
COLCA1-201ENST00000355430 DYSFO75923 2080 aa9.56□□□□□ -0.88
COLCA1-201ENST00000355430 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.56□□□□□ -0.88
COLCA1-201ENST00000355430 KIAA1549Q9HCM3 1950 aa9.56□□□□□ -0.88
COLCA1-201ENST00000355430 M0R2P5 195 aa9.56□□□□□ -0.88
COLCA1-201ENST00000355430 DNAL4O96015 105 aa9.56□□□□□ -0.88
COLCA1-201ENST00000355430 NCOR2Q9Y618 2525 aa9.56□□□□□ -0.88
COLCA1-201ENST00000355430 TEX48A0A1B0GUV7 120 aa9.56□□□□□ -0.88
COLCA1-201ENST00000355430 K7EMI3 77 aa9.56□□□□□ -0.88
COLCA1-201ENST00000355430 RNASE1P07998 156 aaKnown RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms