RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 CFC1BP0CG36 223 aa14.21□□□□□ -0.13
SMAD4-201ENST00000342988 CFC1P0CG37 223 aa14.21□□□□□ -0.13
SMAD4-201ENST00000342988 TMEM14EPQ6UXP3 125 aa14.21□□□□□ -0.13
SMAD4-201ENST00000342988 WFDC1Q9HC57 220 aa14.21□□□□□ -0.13
SMAD4-201ENST00000342988 ICOSQ9Y6W8 199 aa14.21□□□□□ -0.13
SMAD4-201ENST00000342988 C12orf74Q32Q52 190 aa14.21□□□□□ -0.13
SMAD4-201ENST00000342988 C18orf32Q8TCD1 76 aa14.21□□□□□ -0.14
SMAD4-201ENST00000342988 BRWD3Q6RI45 1802 aa14.21□□□□□ -0.14
SMAD4-201ENST00000342988 IGHV1-18A0A0C4DH31 117 aa14.21□□□□□ -0.14
SMAD4-201ENST00000342988 ATP1A1-AS1Q5TC04 95 aa14.21□□□□□ -0.14
SMAD4-201ENST00000342988 MRPL53Q96EL3 112 aaKnown RBP14.21□□□□□ -0.14
SMAD4-201ENST00000342988 LRP4O75096 1905 aa14.21□□□□□ -0.14
SMAD4-201ENST00000342988 EFNA2O43921 213 aa14.2□□□□□ -0.14
SMAD4-201ENST00000342988 B9D2Q9BPU9 175 aa14.2□□□□□ -0.14
SMAD4-201ENST00000342988 K7ERJ3 54 aa14.2□□□□□ -0.14
SMAD4-201ENST00000342988 Q9H8V8 135 aa14.2□□□□□ -0.14
SMAD4-201ENST00000342988 SAA4P35542 130 aa14.2□□□□□ -0.14
SMAD4-201ENST00000342988 COX7A2LO14548 114 aa14.2□□□□□ -0.14
SMAD4-201ENST00000342988 RPP25LQ8N5L8 163 aaKnown RBP14.2□□□□□ -0.14
SMAD4-201ENST00000342988 SERP1Q9Y6X1 66 aa14.2□□□□□ -0.14
SMAD4-201ENST00000342988 CCL18P55774 89 aa14.2□□□□□ -0.14
SMAD4-201ENST00000342988 IGLV3-21P80748 117 aaPredicted RBP14.19□□□□□ -0.14
SMAD4-201ENST00000342988 CAMK2N2Q96S95 79 aa14.19□□□□□ -0.14
SMAD4-201ENST00000342988 LYZL4Q96KX0 146 aa14.19□□□□□ -0.14
SMAD4-201ENST00000342988 C8orf49Q96NF6 230 aa14.19□□□□□ -0.14
SMAD4-201ENST00000342988 NTN5Q8WTR8 489 aaPredicted RBP14.19□□□□□ -0.14
SMAD4-201ENST00000342988 KLK9Q9UKQ9 250 aa14.19□□□□□ -0.14
SMAD4-201ENST00000342988 THSD7AQ9UPZ6 1657 aa14.19□□□□□ -0.14
SMAD4-201ENST00000342988 C8orf86Q6ZUL3 223 aa14.19□□□□□ -0.14
SMAD4-201ENST00000342988 IGKV3D-7A0A0C4DH55 119 aa14.18□□□□□ -0.14
SMAD4-201ENST00000342988 MRPL35Q9NZE8 188 aaKnown RBP14.18□□□□□ -0.14
SMAD4-201ENST00000342988 NHSL1Q5SYE7 1610 aa14.18□□□□□ -0.14
SMAD4-201ENST00000342988 C5orf63A6NC05 138 aa14.17□□□□□ -0.14
SMAD4-201ENST00000342988 LY6G6FQ5SQ64 297 aa14.17□□□□□ -0.14
SMAD4-201ENST00000342988 NDUFC1O43677 76 aa14.17□□□□□ -0.14
SMAD4-201ENST00000342988 TMEM61Q8N0U2 210 aa14.17□□□□□ -0.14
SMAD4-201ENST00000342988 Q9HAA7 133 aa14.17□□□□□ -0.14
SMAD4-201ENST00000342988 CCDC168Q8NDH2 2452 aa14.17□□□□□ -0.14
SMAD4-201ENST00000342988 YPEL3P61236 119 aaPredicted RBP14.17□□□□□ -0.14
SMAD4-201ENST00000342988 GPR179Q6PRD1 2367 aa14.16□□□□□ -0.14
SMAD4-201ENST00000342988 MBD3L4A6NDZ8 208 aaPredicted RBP14.16□□□□□ -0.14
SMAD4-201ENST00000342988 MBD3L3A6NE82 208 aaPredicted RBP14.16□□□□□ -0.14
SMAD4-201ENST00000342988 MBD3L5A6NJ08 208 aaPredicted RBP14.16□□□□□ -0.14
SMAD4-201ENST00000342988 MBD3L2Q8NHZ7 208 aaPredicted RBP14.16□□□□□ -0.14
SMAD4-201ENST00000342988 UPK3BQ9BT76 320 aa14.16□□□□□ -0.14
SMAD4-201ENST00000342988 TRAV4A0A0B4J268 109 aa14.16□□□□□ -0.14
SMAD4-201ENST00000342988 TRBV10-2A0A0K0K1G8 114 aa14.16□□□□□ -0.14
SMAD4-201ENST00000342988 SND1-IT1Q9HBX3 110 aa14.16□□□□□ -0.14
SMAD4-201ENST00000342988 MPLKIPQ8TAP9 179 aa14.16□□□□□ -0.14
SMAD4-201ENST00000342988 CRYGBP07316 175 aa14.16□□□□□ -0.14
SMAD4-201ENST00000342988 EIF4EBP2Q13542 120 aaPredicted RBP14.16□□□□□ -0.14
SMAD4-201ENST00000342988 SIGLEC8Q9NYZ4 499 aa14.16□□□□□ -0.14
SMAD4-201ENST00000342988 OVOL3O00110 214 aa14.15□□□□□ -0.14
SMAD4-201ENST00000342988 NTF4P34130 210 aa14.15□□□□□ -0.14
SMAD4-201ENST00000342988 HIST2H2BCQ6DN03 193 aa14.15□□□□□ -0.14
SMAD4-201ENST00000342988 TEN1Q86WV5 123 aa14.15□□□□□ -0.14
SMAD4-201ENST00000342988 NDUFS6O75380 124 aaKnown RBP14.15□□□□□ -0.14
SMAD4-201ENST00000342988 CR1LQ2VPA4 569 aa14.15□□□□□ -0.14
SMAD4-201ENST00000342988 FGFBP3Q8TAT2 258 aa14.15□□□□□ -0.14
SMAD4-201ENST00000342988 IGHV4OR15-8A0A075B7B6 117 aa14.14□□□□□ -0.15
SMAD4-201ENST00000342988 A0A087WW49 117 aa14.14□□□□□ -0.15
SMAD4-201ENST00000342988 IGHV3-38A0A0C4DH36 116 aa14.14□□□□□ -0.15
SMAD4-201ENST00000342988 WISP3O95389 354 aaPredicted RBP14.14□□□□□ -0.15
SMAD4-201ENST00000342988 A6NED7 52 aa14.14□□□□□ -0.15
SMAD4-201ENST00000342988 SIP14410 1827 aa14.14□□□□□ -0.15
SMAD4-201ENST00000342988 FOXI2Q6ZQN5 318 aa14.13□□□□□ -0.15
SMAD4-201ENST00000342988 GFI1Q99684 422 aa14.13□□□□□ -0.15
SMAD4-201ENST00000342988 TMEM14BQ9NUH8 114 aa14.13□□□□□ -0.15
SMAD4-201ENST00000342988 ITGBL1O95965 494 aaPredicted RBP14.13□□□□□ -0.15
SMAD4-201ENST00000342988 BRD3OSQ6XYD6 125 aa14.13□□□□□ -0.15
SMAD4-201ENST00000342988 TRBV6-6A0A0A6YYG2 114 aa14.13□□□□□ -0.15
SMAD4-201ENST00000342988 C14orf177Q52M58 125 aa14.13□□□□□ -0.15
SMAD4-201ENST00000342988 TMEM14CQ9P0S9 112 aa14.13□□□□□ -0.15
SMAD4-201ENST00000342988 TMEM213A2RRL7 107 aa14.13□□□□□ -0.15
SMAD4-201ENST00000342988 MRPL23Q16540 153 aaKnown RBP14.12□□□□□ -0.15
SMAD4-201ENST00000342988 RAI1Q7Z5J4 1906 aaPredicted RBP14.12□□□□□ -0.15
SMAD4-201ENST00000342988 TRAV26-2A0A0B4J265 109 aa14.12□□□□□ -0.15
SMAD4-201ENST00000342988 J3QLI3 93 aa14.12□□□□□ -0.15
SMAD4-201ENST00000342988 NPSP0C0P6 89 aa14.12□□□□□ -0.15
SMAD4-201ENST00000342988 DIRC1Q969H9 104 aa14.12□□□□□ -0.15
SMAD4-201ENST00000342988 FAM110AQ9BQ89 295 aa14.12□□□□□ -0.15
SMAD4-201ENST00000342988 LYRM9A8MSI8 78 aa14.11□□□□□ -0.15
SMAD4-201ENST00000342988 C10orf105Q8TEF2 133 aa14.11□□□□□ -0.15
SMAD4-201ENST00000342988 NDUFA1O15239 70 aa14.11□□□□□ -0.15
SMAD4-201ENST00000342988 ZNF362Q5T0B9 420 aaPredicted RBP14.11□□□□□ -0.15
SMAD4-201ENST00000342988 LYNX1G3V0Z9 82 aa14.11□□□□□ -0.15
SMAD4-201ENST00000342988 TIAF1O95411 115 aa14.11□□□□□ -0.15
SMAD4-201ENST00000342988 LYNX1P0DP58 116 aa14.11□□□□□ -0.15
SMAD4-201ENST00000342988 NOP10Q9NPE3 64 aaKnown RBP14.11□□□□□ -0.15
SMAD4-201ENST00000342988 RETNQ9HD89 108 aa14.1□□□□□ -0.15
SMAD4-201ENST00000342988 TRBV19A0A075B6N1 114 aa14.1□□□□□ -0.15
SMAD4-201ENST00000342988 FAM110DQ8TAY7 271 aaPredicted RBP14.1□□□□□ -0.15
SMAD4-201ENST00000342988 C10orf55Q5SWW7 151 aa14.1□□□□□ -0.15
SMAD4-201ENST00000342988 C16orf74Q96GX8 76 aa14.1□□□□□ -0.15
SMAD4-201ENST00000342988 FANCD2OSQ96PS1 177 aa14.1□□□□□ -0.15
SMAD4-201ENST00000342988 UBE2E1P51965 193 aa14.1□□□□□ -0.15
SMAD4-201ENST00000342988 COL11A2P13942 1736 aaPredicted RBP14.1□□□□□ -0.15
SMAD4-201ENST00000342988 MSMBP08118 114 aa14.09□□□□□ -0.15
SMAD4-201ENST00000342988 BTCP35070 178 aa14.09□□□□□ -0.15
SMAD4-201ENST00000342988 SPRR3Q9UBC9 169 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms