RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 CRYGBP07316 175 aa10.33□□□□□ -0.76
USP47-202ENST00000339865 LYL1P12980 280 aa10.33□□□□□ -0.76
USP47-202ENST00000339865 NUP210Q8TEM1 1887 aaPredicted RBP10.33□□□□□ -0.76
USP47-202ENST00000339865 IFI6P09912 130 aa10.33□□□□□ -0.76
USP47-202ENST00000339865 SRSF2Q01130 221 aaKnown RBP10.33□□□□□ -0.76
USP47-202ENST00000339865 TNRC6CQ9HCJ0 1690 aaKnown RBP10.33□□□□□ -0.76
USP47-202ENST00000339865 C3orf22Q8N5N4 141 aa10.32□□□□□ -0.76
USP47-202ENST00000339865 MINOS1Q5TGZ0 78 aa10.32□□□□□ -0.76
USP47-202ENST00000339865 FOXI2Q6ZQN5 318 aa10.32□□□□□ -0.76
USP47-202ENST00000339865 MINOS1-NBL1R4GNA1 71 aa10.32□□□□□ -0.76
USP47-202ENST00000339865 ZNF672Q499Z4 452 aaPredicted RBP10.32□□□□□ -0.76
USP47-202ENST00000339865 Q0VFX4 171 aa10.32□□□□□ -0.76
USP47-202ENST00000339865 PCP2Q8IVA1 136 aa10.32□□□□□ -0.76
USP47-202ENST00000339865 ZNF503Q96F45 646 aa10.32□□□□□ -0.76
USP47-202ENST00000339865 TTC28Q96AY4 2481 aa10.32□□□□□ -0.76
USP47-202ENST00000339865 LINC00473A8K010 186 aa10.32□□□□□ -0.76
USP47-202ENST00000339865 EFNA2O43921 213 aa10.32□□□□□ -0.76
USP47-202ENST00000339865 NDUFS7O75251 213 aa10.32□□□□□ -0.76
USP47-202ENST00000339865 GTSF1Q8WW33 167 aa10.32□□□□□ -0.76
USP47-202ENST00000339865 TRAV23DV6A0A075B6W5 121 aa10.31□□□□□ -0.76
USP47-202ENST00000339865 OVOL3O00110 214 aa10.31□□□□□ -0.76
USP47-202ENST00000339865 ADAMTS9Q9P2N4 1935 aa10.31□□□□□ -0.76
USP47-202ENST00000339865 SHANK3Q9BYB0 1731 aa10.31□□□□□ -0.76
USP47-202ENST00000339865 SIVA1O15304 175 aa10.31□□□□□ -0.76
USP47-202ENST00000339865 FANCD2OSQ96PS1 177 aa10.31□□□□□ -0.76
USP47-202ENST00000339865 IGKV1D-12P01611 117 aa10.31□□□□□ -0.76
USP47-202ENST00000339865 KLK5Q9Y337 293 aaPredicted RBP10.31□□□□□ -0.76
USP47-202ENST00000339865 C5orf24Q7Z6I8 188 aa10.31□□□□□ -0.76
USP47-202ENST00000339865 IGKV1-16P04430 117 aa10.31□□□□□ -0.76
USP47-202ENST00000339865 WFDC2Q14508 124 aa10.3□□□□□ -0.76
USP47-202ENST00000339865 TRAV4A0A0B4J268 109 aa10.3□□□□□ -0.76
USP47-202ENST00000339865 C9orf47Q6ZRZ4 202 aa10.3□□□□□ -0.76
USP47-202ENST00000339865 TMEM61Q8N0U2 210 aa10.3□□□□□ -0.76
USP47-202ENST00000339865 ICOSQ9Y6W8 199 aa10.3□□□□□ -0.76
USP47-202ENST00000339865 MYO18BQ8IUG5 2567 aa10.3□□□□□ -0.76
USP47-202ENST00000339865 ZNF106Q9H2Y7 1883 aaKnown RBP10.3□□□□□ -0.76
USP47-202ENST00000339865 SMIM27A0A1W2PRY6 76 aa10.3□□□□□ -0.76
USP47-202ENST00000339865 A0A0J9YY99 117 aa10.29□□□□□ -0.76
USP47-202ENST00000339865 TMEM178BH3BS89 294 aa10.29□□□□□ -0.76
USP47-202ENST00000339865 HERV-K104P63124 156 aa10.29□□□□□ -0.76
USP47-202ENST00000339865 C5orf38Q86SI9 138 aa10.29□□□□□ -0.76
USP47-202ENST00000339865 NLRC5Q86WI3 1866 aa10.29□□□□□ -0.76
USP47-202ENST00000339865 FAM240AA0A1B0GVK7 77 aa10.29□□□□□ -0.76
USP47-202ENST00000339865 SLC25A29Q8N8R3 303 aa10.29□□□□□ -0.76
USP47-202ENST00000339865 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.29□□□□□ -0.76
USP47-202ENST00000339865 IGKV2-29A2NJV5 120 aaPredicted RBP10.29□□□□□ -0.76
USP47-202ENST00000339865 LYPD3O95274 346 aa10.29□□□□□ -0.76
USP47-202ENST00000339865 Q6ZQT7 251 aa10.29□□□□□ -0.76
USP47-202ENST00000339865 LHFPL1Q86WI0 220 aa10.29□□□□□ -0.76
USP47-202ENST00000339865 SHANK2-AS3Q9BTD1 123 aa10.29□□□□□ -0.76
USP47-202ENST00000339865 MST1P26927 711 aa10.29□□□□□ -0.76
USP47-202ENST00000339865 C8orf86Q6ZUL3 223 aa10.29□□□□□ -0.76
USP47-202ENST00000339865 IGKV1-12A0A0C4DH73 117 aa10.28□□□□□ -0.76
USP47-202ENST00000339865 SAA4P35542 130 aa10.28□□□□□ -0.76
USP47-202ENST00000339865 MARF1Q9Y4F3 1742 aaKnown RBP10.28□□□□□ -0.76
USP47-202ENST00000339865 B4DSR2 109 aa10.28□□□□□ -0.76
USP47-202ENST00000339865 WISP1O95388 367 aa10.28□□□□□ -0.76
USP47-202ENST00000339865 HIST2H2BCQ6DN03 193 aa10.28□□□□□ -0.76
USP47-202ENST00000339865 DEFB125Q8N687 156 aa10.28□□□□□ -0.76
USP47-202ENST00000339865 GFI1Q99684 422 aa10.28□□□□□ -0.76
USP47-202ENST00000339865 OPRPNQ99935 248 aaPredicted RBP10.28□□□□□ -0.76
USP47-202ENST00000339865 TEX36Q5VZQ5 186 aa10.28□□□□□ -0.76
USP47-202ENST00000339865 UBE2AP49459 152 aa10.27□□□□□ -0.76
USP47-202ENST00000339865 SPRR3Q9UBC9 169 aa10.27□□□□□ -0.76
USP47-202ENST00000339865 CCDC168Q8NDH2 2452 aa10.27□□□□□ -0.76
USP47-202ENST00000339865 F8W735 103 aaPredicted RBP10.27□□□□□ -0.77
USP47-202ENST00000339865 C9JQL5 133 aa10.27□□□□□ -0.77
USP47-202ENST00000339865 FAM110AQ9BQ89 295 aa10.27□□□□□ -0.77
USP47-202ENST00000339865 SRRM5B3KS81 715 aa10.27□□□□□ -0.77
USP47-202ENST00000339865 TEN1Q86WV5 123 aa10.27□□□□□ -0.77
USP47-202ENST00000339865 SND1-IT1Q9HBX3 110 aa10.27□□□□□ -0.77
USP47-202ENST00000339865 SRCAPQ6ZRS2 3230 aa10.27□□□□□ -0.77
USP47-202ENST00000339865 IGKV1-27A0A075B6S5 117 aa10.26□□□□□ -0.77
USP47-202ENST00000339865 PRR15LQ9BU68 103 aa10.26□□□□□ -0.77
USP47-202ENST00000339865 PNRC2Q9NPJ4 139 aaKnown RBP10.26□□□□□ -0.77
USP47-202ENST00000339865 TRBV12-3P01733 135 aa10.26□□□□□ -0.77
USP47-202ENST00000339865 C17orf77Q96MU5 243 aa10.26□□□□□ -0.77
USP47-202ENST00000339865 IGLV10-54A0A075B6I4 117 aa10.26□□□□□ -0.77
USP47-202ENST00000339865 CTSGP08311 255 aa10.26□□□□□ -0.77
USP47-202ENST00000339865 CD177Q8N6Q3 437 aa10.26□□□□□ -0.77
USP47-202ENST00000339865 ZNF492Q9P255 531 aa10.25□□□□□ -0.77
USP47-202ENST00000339865 V9GYV3 84 aa10.25□□□□□ -0.77
USP47-202ENST00000339865 MRPS18CQ9Y3D5 142 aaKnown RBP10.25□□□□□ -0.77
USP47-202ENST00000339865 G3V4G9 280 aa10.25□□□□□ -0.77
USP47-202ENST00000339865 IGHV2-70DA0A0C4DH43 119 aa10.25□□□□□ -0.77
USP47-202ENST00000339865 ZNF134P52741 427 aa10.25□□□□□ -0.77
USP47-202ENST00000339865 NOP10Q9NPE3 64 aaKnown RBP10.25□□□□□ -0.77
USP47-202ENST00000339865 A6NED7 52 aa10.25□□□□□ -0.77
USP47-202ENST00000339865 TIRAPP58753 221 aa10.25□□□□□ -0.77
USP47-202ENST00000339865 LINC00114Q6XXX2 140 aa10.25□□□□□ -0.77
USP47-202ENST00000339865 ZC2HC1AQ96GY0 325 aa10.25□□□□□ -0.77
USP47-202ENST00000339865 USP17L23D6RBM5 183 aa10.24□□□□□ -0.77
USP47-202ENST00000339865 CCL18P55774 89 aa10.24□□□□□ -0.77
USP47-202ENST00000339865 UBE2D4Q9Y2X8 147 aa10.24□□□□□ -0.77
USP47-202ENST00000339865 IGKV2D-26A0A0A0MRZ7 120 aa10.24□□□□□ -0.77
USP47-202ENST00000339865 J3QRE1 110 aa10.24□□□□□ -0.77
USP47-202ENST00000339865 CFPP27918 469 aa10.24□□□□□ -0.77
USP47-202ENST00000339865 WDR86Q86TI4 376 aa10.24□□□□□ -0.77
USP47-202ENST00000339865 ZNRD1Q9P1U0 126 aa10.24□□□□□ -0.77
USP47-202ENST00000339865 C5orf67F2Z3F1 127 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms