RNA–Protein interactions for RNA: ENST00000331462.5

HOXD1-201, Transcript of homeobox D1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD1, Length 1,975 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD1-201ENST00000331462 MED14OSP0DP75 135 aa17.14■□□□□ 0.33
HOXD1-201ENST00000331462 TRAV12-1A0A0B4J245 112 aa17.13■□□□□ 0.33
HOXD1-201ENST00000331462 H3BUA1 57 aa17.13■□□□□ 0.33
HOXD1-201ENST00000331462 GTSCR1Q86UQ5 136 aa17.13■□□□□ 0.33
HOXD1-201ENST00000331462 TM2D2Q9BX73 214 aa17.13■□□□□ 0.33
HOXD1-201ENST00000331462 CACNA1AO00555 2505 aa17.13■□□□□ 0.33
HOXD1-201ENST00000331462 TRAV21A0A0B4J279 112 aa17.13■□□□□ 0.33
HOXD1-201ENST00000331462 K7EMI3 77 aa17.13■□□□□ 0.33
HOXD1-201ENST00000331462 SMIM13P0DJ93 91 aa17.13■□□□□ 0.33
HOXD1-201ENST00000331462 PLNP26678 52 aa17.13■□□□□ 0.33
HOXD1-201ENST00000331462 FAM19A4Q96LR4 140 aa17.13■□□□□ 0.33
HOXD1-201ENST00000331462 MEGF9Q9H1U4 602 aa17.13■□□□□ 0.33
HOXD1-201ENST00000331462 SLC25A16P16260 332 aa17.12■□□□□ 0.33
HOXD1-201ENST00000331462 FXYD2P54710 66 aa17.12■□□□□ 0.33
HOXD1-201ENST00000331462 UNQ9165/PRO28630Q6UXU0 137 aa17.12■□□□□ 0.33
HOXD1-201ENST00000331462 APRG1Q8IVJ8 170 aa17.12■□□□□ 0.33
HOXD1-201ENST00000331462 C20orf78Q9BR46 151 aa17.12■□□□□ 0.33
HOXD1-201ENST00000331462 TTTY13Q9BZ97 58 aa17.12■□□□□ 0.33
HOXD1-201ENST00000331462 TRAV40A0A0B4J280 105 aa17.11■□□□□ 0.33
HOXD1-201ENST00000331462 TRBV7-9A0A0J9YWB2 115 aa17.11■□□□□ 0.33
HOXD1-201ENST00000331462 OR10J6PQ8NGY7 276 aa17.11■□□□□ 0.33
HOXD1-201ENST00000331462 ATRXP46100 2492 aa17.11■□□□□ 0.33
HOXD1-201ENST00000331462 MED13LQ71F56 2210 aa17.11■□□□□ 0.33
HOXD1-201ENST00000331462 GCSHP23434 173 aa17.11■□□□□ 0.33
HOXD1-201ENST00000331462 ORMDL2Q53FV1 153 aa17.11■□□□□ 0.33
HOXD1-201ENST00000331462 RAB37Q96AX2 223 aa17.11■□□□□ 0.33
HOXD1-201ENST00000331462 TMEM160Q9NX00 188 aa17.11■□□□□ 0.33
HOXD1-201ENST00000331462 USMG5Q96IX5 58 aa17.1■□□□□ 0.33
HOXD1-201ENST00000331462 VPS25Q9BRG1 176 aa17.1■□□□□ 0.33
HOXD1-201ENST00000331462 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP17.09■□□□□ 0.33
HOXD1-201ENST00000331462 M0R381 172 aa17.09■□□□□ 0.33
HOXD1-201ENST00000331462 IGHV4-39P01824 125 aa17.09■□□□□ 0.33
HOXD1-201ENST00000331462 TAL2Q16559 108 aa17.09■□□□□ 0.33
HOXD1-201ENST00000331462 PHLDA1Q8WV24 401 aaPredicted RBP17.09■□□□□ 0.33
HOXD1-201ENST00000331462 NAA38Q9BRA0 125 aaKnown RBP17.09■□□□□ 0.33
HOXD1-201ENST00000331462 LINC00527Q9UJ94 153 aa17.09■□□□□ 0.33
HOXD1-201ENST00000331462 SPCS1Q9Y6A9 102 aa17.09■□□□□ 0.33
HOXD1-201ENST00000331462 TRBV12-3P01733 135 aa17.09■□□□□ 0.33
HOXD1-201ENST00000331462 FABP2P12104 132 aa17.09■□□□□ 0.33
HOXD1-201ENST00000331462 DPH3P1Q9H4G8 78 aa17.09■□□□□ 0.33
HOXD1-201ENST00000331462 ASIPP42127 132 aa17.08■□□□□ 0.33
HOXD1-201ENST00000331462 SUMO2P61956 95 aaKnown RBP17.08■□□□□ 0.33
HOXD1-201ENST00000331462 TM4SF20Q53R12 229 aa17.08■□□□□ 0.33
HOXD1-201ENST00000331462 CEND1Q8N111 149 aa17.08■□□□□ 0.33
HOXD1-201ENST00000331462 RASL10AQ92737 203 aa17.08■□□□□ 0.33
HOXD1-201ENST00000331462 TOMM6Q96B49 74 aa17.08■□□□□ 0.33
HOXD1-201ENST00000331462 F8VRH5 84 aa17.08■□□□□ 0.32
HOXD1-201ENST00000331462 SAMD5Q5TGI4 173 aa17.08■□□□□ 0.32
HOXD1-201ENST00000331462 NEGR1Q7Z3B1 354 aa17.08■□□□□ 0.32
HOXD1-201ENST00000331462 CACNA1BQ00975 2339 aa17.07■□□□□ 0.32
HOXD1-201ENST00000331462 H7C1H1 209 aa17.07■□□□□ 0.32
HOXD1-201ENST00000331462 IGHG2P01859 326 aa17.07■□□□□ 0.32
HOXD1-201ENST00000331462 HIVEP3Q5T1R4 2406 aa17.07■□□□□ 0.32
HOXD1-201ENST00000331462 IGHV3OR16-10A0A075B7F0 116 aa17.06■□□□□ 0.32
HOXD1-201ENST00000331462 LINC01619G3V211 115 aa17.06■□□□□ 0.32
HOXD1-201ENST00000331462 C19orf84I3L1E1 186 aa17.05■□□□□ 0.32
HOXD1-201ENST00000331462 NXPH4O95158 308 aa17.05■□□□□ 0.32
HOXD1-201ENST00000331462 POM121L12Q8N7R1 296 aa17.05■□□□□ 0.32
HOXD1-201ENST00000331462 MAPKAPK5-AS1Q8N8E1 139 aa17.05■□□□□ 0.32
HOXD1-201ENST00000331462 SPTBN1Q01082 2364 aaKnown RBP17.05■□□□□ 0.32
HOXD1-201ENST00000331462 RNF223E7ERA6 249 aa17.04■□□□□ 0.32
HOXD1-201ENST00000331462 ANXA2RQ3ZCQ2 193 aa17.04■□□□□ 0.32
HOXD1-201ENST00000331462 BRD3OSQ6XYD6 125 aa17.04■□□□□ 0.32
HOXD1-201ENST00000331462 SAP30O75446 220 aa17.04■□□□□ 0.32
HOXD1-201ENST00000331462 S100A4P26447 101 aaKnown RBP17.04■□□□□ 0.32
HOXD1-201ENST00000331462 NEXN-AS1Q8NBZ9 246 aa17.04■□□□□ 0.32
HOXD1-201ENST00000331462 PHLDA3Q9Y5J5 127 aa17.04■□□□□ 0.32
HOXD1-201ENST00000331462 CHD8Q9HCK8 2581 aa17.03■□□□□ 0.32
HOXD1-201ENST00000331462 ABCA2Q9BZC7 2435 aa17.03■□□□□ 0.32
HOXD1-201ENST00000331462 A6NDX4 124 aa17.03■□□□□ 0.32
HOXD1-201ENST00000331462 PPP1R17O96001 155 aa17.03■□□□□ 0.32
HOXD1-201ENST00000331462 SCGB3A1Q96QR1 104 aa17.02■□□□□ 0.32
HOXD1-201ENST00000331462 SPOCK3Q9BQ16 436 aa17.02■□□□□ 0.32
HOXD1-201ENST00000331462 COTL1Q14019 142 aa17.02■□□□□ 0.31
HOXD1-201ENST00000331462 PIMREGQ9BSJ6 248 aa17.02■□□□□ 0.31
HOXD1-201ENST00000331462 IGHV4-61A0A0C4DH41 118 aa17.01■□□□□ 0.31
HOXD1-201ENST00000331462 J3KRW8 73 aa17.01■□□□□ 0.31
HOXD1-201ENST00000331462 RNASE3P12724 160 aaKnown RBP17.01■□□□□ 0.31
HOXD1-201ENST00000331462 C14orf178Q8N769 122 aaPredicted RBP17.01■□□□□ 0.31
HOXD1-201ENST00000331462 CHTOPQ9Y3Y2 248 aaKnown RBP17.01■□□□□ 0.31
HOXD1-201ENST00000331462 G3V4G9 280 aa17■□□□□ 0.31
HOXD1-201ENST00000331462 K7ERJ3 54 aa17■□□□□ 0.31
HOXD1-201ENST00000331462 LY6DQ14210 128 aa17■□□□□ 0.31
HOXD1-201ENST00000331462 RPL39LQ96EH5 51 aaKnown RBP17■□□□□ 0.31
HOXD1-201ENST00000331462 PRORYQ9H606 182 aa17■□□□□ 0.31
HOXD1-201ENST00000331462 NHP2Q9NX24 153 aaKnown RBP17■□□□□ 0.31
HOXD1-201ENST00000331462 RPL32P62910 135 aaKnown RBP17■□□□□ 0.31
HOXD1-201ENST00000331462 COL6A6A6NMZ7 2263 aa17■□□□□ 0.31
HOXD1-201ENST00000331462 E9PLD3 99 aa16.99■□□□□ 0.31
HOXD1-201ENST00000331462 IGLV1-40P01703 118 aa16.99■□□□□ 0.31
HOXD1-201ENST00000331462 RNASE4P34096 147 aaKnown RBP16.99■□□□□ 0.31
HOXD1-201ENST00000331462 IGHV4-38-2P0DP08 117 aa16.98■□□□□ 0.31
HOXD1-201ENST00000331462 DEFB1P60022 68 aa16.98■□□□□ 0.31
HOXD1-201ENST00000331462 C10orf105Q8TEF2 133 aa16.98■□□□□ 0.31
HOXD1-201ENST00000331462 RHPN1-AS1Q9BWJ2 59 aa16.98■□□□□ 0.31
HOXD1-201ENST00000331462 KLK15Q9H2R5 256 aa16.98■□□□□ 0.31
HOXD1-201ENST00000331462 ASH1LQ9NR48 2969 aaKnown RBP16.98■□□□□ 0.31
HOXD1-201ENST00000331462 TRBV7-3A0A075B6L6 115 aa16.98■□□□□ 0.31
HOXD1-201ENST00000331462 NDUFS8O00217 210 aa16.98■□□□□ 0.31
HOXD1-201ENST00000331462 C2orf66Q6UXQ4 117 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms