RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 CENPVL3A0A0U1RRI6 287 aa12□□□□□ -0.49
SHROOM1-201ENST00000319854 FOXI2Q6ZQN5 318 aa12□□□□□ -0.49
SHROOM1-201ENST00000319854 AJUBAQ96IF1 538 aa12□□□□□ -0.49
SHROOM1-201ENST00000319854 A0A1B0GW15 77 aa12□□□□□ -0.49
SHROOM1-201ENST00000319854 CT45A10P0DMU9 189 aa12□□□□□ -0.49
SHROOM1-201ENST00000319854 ODF1Q14990 250 aa12□□□□□ -0.49
SHROOM1-201ENST00000319854 C1orf122Q6ZSJ8 110 aa12□□□□□ -0.49
SHROOM1-201ENST00000319854 TMEM75Q8N9X5 138 aa12□□□□□ -0.49
SHROOM1-201ENST00000319854 IGLL5B9A064 214 aa12□□□□□ -0.49
SHROOM1-201ENST00000319854 E9PLD3 99 aa12□□□□□ -0.49
SHROOM1-201ENST00000319854 CKS2P33552 79 aa12□□□□□ -0.49
SHROOM1-201ENST00000319854 TRAV26-1A0A087WT03 109 aa11.99□□□□□ -0.49
SHROOM1-201ENST00000319854 ERCC8Q13216 396 aa11.99□□□□□ -0.49
SHROOM1-201ENST00000319854 LCNL1Q6ZST4 164 aa11.99□□□□□ -0.49
SHROOM1-201ENST00000319854 SPATA25Q9BR10 227 aa11.99□□□□□ -0.49
SHROOM1-201ENST00000319854 MSRB1Q9NZV6 116 aa11.99□□□□□ -0.49
SHROOM1-201ENST00000319854 MRPS12O15235 138 aaKnown RBP11.99□□□□□ -0.49
SHROOM1-201ENST00000319854 CKS1BP61024 79 aa11.99□□□□□ -0.49
SHROOM1-201ENST00000319854 MAPKAPK5-AS1Q8N8E1 139 aa11.99□□□□□ -0.49
SHROOM1-201ENST00000319854 SORL1Q92673 2214 aa11.99□□□□□ -0.49
SHROOM1-201ENST00000319854 PRB1P04280 392 aa11.98□□□□□ -0.49
SHROOM1-201ENST00000319854 CEND1Q8N111 149 aa11.98□□□□□ -0.49
SHROOM1-201ENST00000319854 CCL19Q99731 98 aa11.98□□□□□ -0.49
SHROOM1-201ENST00000319854 IGKV3-7A0A075B6H7 116 aa11.98□□□□□ -0.49
SHROOM1-201ENST00000319854 TRBV6-1A0A0K0K1D8 114 aa11.98□□□□□ -0.49
SHROOM1-201ENST00000319854 ATP5J2P56134 94 aa11.98□□□□□ -0.49
SHROOM1-201ENST00000319854 HIGD1BQ9P298 99 aa11.98□□□□□ -0.49
SHROOM1-201ENST00000319854 A6NJY4 79 aa11.98□□□□□ -0.49
SHROOM1-201ENST00000319854 ZMAT4Q9H898 229 aa11.98□□□□□ -0.49
SHROOM1-201ENST00000319854 SMAD5-AS1Q9Y6J3 95 aa11.98□□□□□ -0.49
SHROOM1-201ENST00000319854 MXRA5Q9NR99 2828 aa11.97□□□□□ -0.49
SHROOM1-201ENST00000319854 FBN2P35556 2912 aa11.97□□□□□ -0.49
SHROOM1-201ENST00000319854 F8W1H4 67 aa11.97□□□□□ -0.49
SHROOM1-201ENST00000319854 SH2D1AO60880 128 aa11.97□□□□□ -0.49
SHROOM1-201ENST00000319854 IGHV4-38-2P0DP08 117 aa11.97□□□□□ -0.49
SHROOM1-201ENST00000319854 PPIFP30405 207 aaKnown RBP11.97□□□□□ -0.49
SHROOM1-201ENST00000319854 CRYBA4P53673 196 aa11.97□□□□□ -0.49
SHROOM1-201ENST00000319854 MAPK1IP1LQ8NDC0 245 aa11.97□□□□□ -0.49
SHROOM1-201ENST00000319854 J3KRW8 73 aa11.97□□□□□ -0.49
SHROOM1-201ENST00000319854 RPL7P18124 248 aaKnown RBP11.97□□□□□ -0.49
SHROOM1-201ENST00000319854 LEPP41159 167 aa11.97□□□□□ -0.49
SHROOM1-201ENST00000319854 TM2D2Q9BX73 214 aa11.97□□□□□ -0.49
SHROOM1-201ENST00000319854 PRAC2D3DTV9 90 aa11.96□□□□□ -0.49
SHROOM1-201ENST00000319854 IGHV3-11P01762 117 aa11.96□□□□□ -0.49
SHROOM1-201ENST00000319854 PRSS1P07477 247 aa11.96□□□□□ -0.49
SHROOM1-201ENST00000319854 TWIST1Q15672 202 aa11.96□□□□□ -0.49
SHROOM1-201ENST00000319854 ZNF575Q86XF7 245 aa11.96□□□□□ -0.49
SHROOM1-201ENST00000319854 OOSP1A8MZH6 123 aa11.96□□□□□ -0.5
SHROOM1-201ENST00000319854 GATA1P15976 413 aaPredicted RBP11.96□□□□□ -0.5
SHROOM1-201ENST00000319854 EBI3Q14213 229 aa11.96□□□□□ -0.5
SHROOM1-201ENST00000319854 ZC2HC1BQ5TFG8 222 aa11.96□□□□□ -0.5
SHROOM1-201ENST00000319854 Q6AWC8 147 aa11.96□□□□□ -0.5
SHROOM1-201ENST00000319854 ZNF479Q96JC4 524 aa11.96□□□□□ -0.5
SHROOM1-201ENST00000319854 EVI2AP22794 236 aa11.95□□□□□ -0.5
SHROOM1-201ENST00000319854 C20orf78Q9BR46 151 aa11.95□□□□□ -0.5
SHROOM1-201ENST00000319854 PIFOQ8TCI5 191 aa11.95□□□□□ -0.5
SHROOM1-201ENST00000319854 TEX15Q9BXT5 2789 aa11.95□□□□□ -0.5
SHROOM1-201ENST00000319854 IGHV4-30-2A0A087WSY4 118 aa11.95□□□□□ -0.5
SHROOM1-201ENST00000319854 CCDC140Q96MF4 163 aa11.95□□□□□ -0.5
SHROOM1-201ENST00000319854 ZNF48Q96MX3 618 aaPredicted RBP11.95□□□□□ -0.5
SHROOM1-201ENST00000319854 FOXC2Q99958 501 aa11.95□□□□□ -0.5
SHROOM1-201ENST00000319854 PRO0461Q9UI25 63 aa11.95□□□□□ -0.5
SHROOM1-201ENST00000319854 IGKCP01834 107 aa11.94□□□□□ -0.5
SHROOM1-201ENST00000319854 ORM1P02763 201 aa11.94□□□□□ -0.5
SHROOM1-201ENST00000319854 ZNF80P51504 273 aaPredicted RBP11.94□□□□□ -0.5
SHROOM1-201ENST00000319854 C12orf74Q32Q52 190 aa11.94□□□□□ -0.5
SHROOM1-201ENST00000319854 TMEM8BA6NDV4 472 aa11.94□□□□□ -0.5
SHROOM1-201ENST00000319854 ZNF502Q8TBZ5 544 aa11.94□□□□□ -0.5
SHROOM1-201ENST00000319854 RNF185Q96GF1 192 aa11.94□□□□□ -0.5
SHROOM1-201ENST00000319854 FAM110DQ8TAY7 271 aaPredicted RBP11.93□□□□□ -0.5
SHROOM1-201ENST00000319854 TMEM160Q9NX00 188 aa11.93□□□□□ -0.5
SHROOM1-201ENST00000319854 TRBV12-3P01733 135 aa11.93□□□□□ -0.5
SHROOM1-201ENST00000319854 SCGB2A1O75556 95 aa11.92□□□□□ -0.5
SHROOM1-201ENST00000319854 DEFB1P60022 68 aa11.92□□□□□ -0.5
SHROOM1-201ENST00000319854 GAGE13Q4V321 117 aa11.92□□□□□ -0.5
SHROOM1-201ENST00000319854 Q6ZS46 218 aa11.92□□□□□ -0.5
SHROOM1-201ENST00000319854 C5orf56Q8N8D9 126 aa11.92□□□□□ -0.5
SHROOM1-201ENST00000319854 H3BUX3 64 aa11.92□□□□□ -0.5
SHROOM1-201ENST00000319854 J3QR89 54 aa11.92□□□□□ -0.5
SHROOM1-201ENST00000319854 TRGV3P03979 118 aa11.92□□□□□ -0.5
SHROOM1-201ENST00000319854 RPL11P62913 178 aaKnown RBP11.92□□□□□ -0.5
SHROOM1-201ENST00000319854 LYPD1Q8N2G4 141 aa11.92□□□□□ -0.5
SHROOM1-201ENST00000319854 PIMREGQ9BSJ6 248 aa11.92□□□□□ -0.5
SHROOM1-201ENST00000319854 FCER1GP30273 86 aa11.91□□□□□ -0.5
SHROOM1-201ENST00000319854 BLCAPP62952 87 aa11.91□□□□□ -0.5
SHROOM1-201ENST00000319854 TMEM158Q8WZ71 300 aa11.91□□□□□ -0.5
SHROOM1-201ENST00000319854 PRR25Q96S07 402 aa11.91□□□□□ -0.5
SHROOM1-201ENST00000319854 IGHG4P01861 327 aa11.91□□□□□ -0.5
SHROOM1-201ENST00000319854 Q6ZQT7 251 aa11.91□□□□□ -0.5
SHROOM1-201ENST00000319854 NOTCH3Q9UM47 2321 aa11.91□□□□□ -0.5
SHROOM1-201ENST00000319854 TRAV41A0A0B4J266 112 aa11.9□□□□□ -0.5
SHROOM1-201ENST00000319854 IGHV1-69DA0A0B4J2H0 117 aa11.9□□□□□ -0.5
SHROOM1-201ENST00000319854 IGHV1-69P01742 117 aa11.9□□□□□ -0.5
SHROOM1-201ENST00000319854 MRPL35Q9NZE8 188 aaKnown RBP11.9□□□□□ -0.5
SHROOM1-201ENST00000319854 BUB3O43684 328 aa11.9□□□□□ -0.5
SHROOM1-201ENST00000319854 PDE6HQ13956 83 aa11.9□□□□□ -0.5
SHROOM1-201ENST00000319854 IL17RELQ6ZVW7 336 aa11.9□□□□□ -0.5
SHROOM1-201ENST00000319854 MAP1LC3AQ9H492 121 aa11.9□□□□□ -0.5
SHROOM1-201ENST00000319854 DPM2O94777 84 aa11.89□□□□□ -0.51
SHROOM1-201ENST00000319854 TNFRSF6BO95407 300 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms