RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 HIVEP2P31629 2446 aa8.54□□□□□ -1.04
LSM3-201ENST00000306024 TIMM23O14925 209 aa8.54□□□□□ -1.04
LSM3-201ENST00000306024 ZFP36P26651 326 aaKnown RBP8.54□□□□□ -1.04
LSM3-201ENST00000306024 KRTAP10-9P60411 292 aa8.54□□□□□ -1.04
LSM3-201ENST00000306024 SRSF1Q07955 248 aaKnown RBP eCLIP8.54□□□□□ -1.04
LSM3-201ENST00000306024 TAL2Q16559 108 aa8.54□□□□□ -1.04
LSM3-201ENST00000306024 DSCAML1Q8TD84 2053 aa8.54□□□□□ -1.04
LSM3-201ENST00000306024 IFITM1P13164 125 aa8.54□□□□□ -1.04
LSM3-201ENST00000306024 BRD3OSQ6XYD6 125 aa8.54□□□□□ -1.04
LSM3-201ENST00000306024 C8orf46Q8TAG6 207 aa8.54□□□□□ -1.04
LSM3-201ENST00000306024 BEX4Q9NWD9 120 aaPredicted RBP8.54□□□□□ -1.04
LSM3-201ENST00000306024 BUB1B-PAK6H3BSN5 160 aa8.54□□□□□ -1.04
LSM3-201ENST00000306024 CGB3P0DN86 165 aa8.54□□□□□ -1.04
LSM3-201ENST00000306024 CGB7P0DN87 165 aa8.54□□□□□ -1.04
LSM3-201ENST00000306024 UTF1Q5T230 341 aa8.54□□□□□ -1.04
LSM3-201ENST00000306024 TM2D2Q9BX73 214 aa8.54□□□□□ -1.04
LSM3-201ENST00000306024 CR1LQ2VPA4 569 aa8.53□□□□□ -1.04
LSM3-201ENST00000306024 LMO4P61968 165 aa8.53□□□□□ -1.04
LSM3-201ENST00000306024 DIAPH2-AS1Q14236 149 aa8.53□□□□□ -1.04
LSM3-201ENST00000306024 TEN1Q86WV5 123 aa8.53□□□□□ -1.04
LSM3-201ENST00000306024 MAP1AP78559 2803 aaPredicted RBP8.53□□□□□ -1.04
LSM3-201ENST00000306024 ODF1Q14990 250 aa8.53□□□□□ -1.04
LSM3-201ENST00000306024 IGHV1-3A0A0C4DH29 117 aa8.52□□□□□ -1.04
LSM3-201ENST00000306024 C9JAW5 83 aa8.52□□□□□ -1.04
LSM3-201ENST00000306024 HERVK_113P61574 105 aa8.52□□□□□ -1.04
LSM3-201ENST00000306024 WT1-ASQ06250 92 aa8.52□□□□□ -1.04
LSM3-201ENST00000306024 LY6EQ16553 131 aa8.52□□□□□ -1.04
LSM3-201ENST00000306024 PPP1R27Q86WC6 154 aa8.52□□□□□ -1.04
LSM3-201ENST00000306024 LINC01356Q8N9X3 169 aa8.52□□□□□ -1.04
LSM3-201ENST00000306024 SLC25A39Q9BZJ4 359 aaPredicted RBP8.52□□□□□ -1.04
LSM3-201ENST00000306024 RAI1Q7Z5J4 1906 aaPredicted RBP8.52□□□□□ -1.05
LSM3-201ENST00000306024 SH2D1AO60880 128 aa8.52□□□□□ -1.05
LSM3-201ENST00000306024 DDB2Q92466 427 aa8.52□□□□□ -1.05
LSM3-201ENST00000306024 C8orf49Q96NF6 230 aa8.52□□□□□ -1.05
LSM3-201ENST00000306024 SCGB3A1Q96QR1 104 aa8.52□□□□□ -1.05
LSM3-201ENST00000306024 NDUFA4L2Q9NRX3 87 aa8.52□□□□□ -1.05
LSM3-201ENST00000306024 TNFRSF6BO95407 300 aa8.52□□□□□ -1.05
LSM3-201ENST00000306024 RPL32P62910 135 aaKnown RBP8.52□□□□□ -1.05
LSM3-201ENST00000306024 MYO9AB2RTY4 2548 aa8.52□□□□□ -1.05
LSM3-201ENST00000306024 AGRNO00468 2067 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 FSTL3O95633 263 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 MEIG1Q5JSS6 88 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 C3orf56Q8N813 242 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 ABCA2Q9BZC7 2435 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 TSPAN13O95857 204 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 HLA-DRB4P13762 266 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 SAA4P35542 130 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 SPANXN1Q5VSR9 72 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 ATP6V0E2Q8NHE4 81 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 TRGV9Q99603 122 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 HLA-DRB4X5D2U9 266 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 MTORP42345 2549 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 NPFFO15130 113 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 PLNP26678 52 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 TMEM95Q3KNT9 176 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 TMEM78Q5T7P6 136 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 LINC00311Q8N616 119 aa8.51□□□□□ -1.05
LSM3-201ENST00000306024 MRPL36Q9P0J6 103 aaKnown RBP8.51□□□□□ -1.05
LSM3-201ENST00000306024 TRAV8-4A0A0B4J246 113 aa8.5□□□□□ -1.05
LSM3-201ENST00000306024 POU2AF1Q16633 256 aa8.5□□□□□ -1.05
LSM3-201ENST00000306024 RUSC1-AS1Q66K80 236 aa8.5□□□□□ -1.05
LSM3-201ENST00000306024 MYMXA0A1B0GTQ4 84 aa8.5□□□□□ -1.05
LSM3-201ENST00000306024 TNFRSF13BO14836 293 aaPredicted RBP8.5□□□□□ -1.05
LSM3-201ENST00000306024 LINC01559Q495D7 138 aa8.5□□□□□ -1.05
LSM3-201ENST00000306024 KIR2DL4Q99706 377 aa8.5□□□□□ -1.05
LSM3-201ENST00000306024 YAE1D1Q9NRH1 226 aa8.5□□□□□ -1.05
LSM3-201ENST00000306024 IGKV2-40A0A087WW87 121 aaPredicted RBP8.5□□□□□ -1.05
LSM3-201ENST00000306024 A0A096LNJ9 63 aa8.5□□□□□ -1.05
LSM3-201ENST00000306024 IGKV2D-40P01614 121 aaPredicted RBP8.5□□□□□ -1.05
LSM3-201ENST00000306024 UBE2E1P51965 193 aa8.5□□□□□ -1.05
LSM3-201ENST00000306024 MINOS1Q5TGZ0 78 aa8.5□□□□□ -1.05
LSM3-201ENST00000306024 IGFBPL1Q8WX77 278 aa8.5□□□□□ -1.05
LSM3-201ENST00000306024 MINOS1-NBL1R4GNA1 71 aa8.5□□□□□ -1.05
LSM3-201ENST00000306024 S4R3C0 116 aa8.5□□□□□ -1.05
LSM3-201ENST00000306024 RPL13AP40429 203 aaKnown RBP8.49□□□□□ -1.05
LSM3-201ENST00000306024 C1orf229Q6ZS94 237 aaPredicted RBP8.49□□□□□ -1.05
LSM3-201ENST00000306024 ZNF833PQ6ZTB9 187 aa8.49□□□□□ -1.05
LSM3-201ENST00000306024 MAPKAPK5-AS1Q8N8E1 139 aa8.49□□□□□ -1.05
LSM3-201ENST00000306024 Q8TAT8 98 aa8.49□□□□□ -1.05
LSM3-201ENST00000306024 ZNF785A8K8V0 405 aa8.49□□□□□ -1.05
LSM3-201ENST00000306024 GP9P14770 177 aa8.49□□□□□ -1.05
LSM3-201ENST00000306024 LAGE3Q14657 143 aa8.49□□□□□ -1.05
LSM3-201ENST00000306024 CDIP1Q9H305 208 aa8.49□□□□□ -1.05
LSM3-201ENST00000306024 C17orf77Q96MU5 243 aa8.49□□□□□ -1.05
LSM3-201ENST00000306024 RELNP78509 3460 aa8.48□□□□□ -1.05
LSM3-201ENST00000306024 A0A1W2PPI3 338 aa8.48□□□□□ -1.05
LSM3-201ENST00000306024 H7C1H1 209 aa8.48□□□□□ -1.05
LSM3-201ENST00000306024 GATA1P15976 413 aaPredicted RBP8.48□□□□□ -1.05
LSM3-201ENST00000306024 NDUFV3P56181 108 aaKnown RBP8.48□□□□□ -1.05
LSM3-201ENST00000306024 ZFP2Q6ZN57 461 aa8.48□□□□□ -1.05
LSM3-201ENST00000306024 ANKRD29Q8N6D5 301 aa8.48□□□□□ -1.05
LSM3-201ENST00000306024 THAP8Q8NA92 274 aa8.48□□□□□ -1.05
LSM3-201ENST00000306024 OR11H6Q8NGC7 330 aa8.48□□□□□ -1.05
LSM3-201ENST00000306024 RAX2Q96IS3 184 aa8.48□□□□□ -1.05
LSM3-201ENST00000306024 TET2Q6N021 2002 aaPredicted RBP8.48□□□□□ -1.05
LSM3-201ENST00000306024 CCDC179H3BU77 68 aa8.48□□□□□ -1.05
LSM3-201ENST00000306024 DLX6P56179 175 aa8.48□□□□□ -1.05
LSM3-201ENST00000306024 FAM159AQ6UWV7 190 aa8.48□□□□□ -1.05
LSM3-201ENST00000306024 LY6G5BQ8NDX9 201 aa8.48□□□□□ -1.05
LSM3-201ENST00000306024 TMEM167AQ8TBQ9 72 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms