RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 DUX4L9Q6RFH8 374 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-212ENST00000636194 LYZL1Q6UWQ5 148 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 KLK9Q9UKQ9 250 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-212ENST00000636194 hDV102S1A0JD36 115 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 MBD3L4A6NDZ8 208 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-212ENST00000636194 MBD3L3A6NE82 208 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-212ENST00000636194 MBD3L5A6NJ08 208 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-212ENST00000636194 PRSS47A8MTI9 375 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 MBD3L2Q8NHZ7 208 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-212ENST00000636194 COX7B2Q8TF08 81 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 XCL2Q9UBD3 114 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 COLQQ9Y215 455 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-212ENST00000636194 IGKV1-5P01602 117 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 NANOS3P60323 173 aaKnown RBP4.9□□□□□ -1.63
SCN1A-212ENST00000636194 C5orf24Q7Z6I8 188 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 EXOC3-AS1Q8N2X6 119 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 ATP5G3P48201 142 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 ZNF134P52741 427 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 DAZ2Q13117 558 aaKnown RBP4.9□□□□□ -1.63
SCN1A-212ENST00000636194 DAZ4Q86SG3 579 aaKnown RBP4.9□□□□□ -1.63
SCN1A-212ENST00000636194 DAZ3Q9NR90 486 aaKnown RBP4.9□□□□□ -1.63
SCN1A-212ENST00000636194 CSDC2Q9Y534 153 aaKnown RBP4.9□□□□□ -1.63
SCN1A-212ENST00000636194 SIGLEC1Q9BZZ2 1709 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 LINC00271P0C7V0 271 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 C7orf33Q8WU49 177 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 TMEM14BQ9NUH8 114 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 TMEM256-PLSCR3K7ERE1 68 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 CELA3BP08861 270 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 UBE2D3P61077 147 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 ZC2HC1BQ5TFG8 222 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 ALPK3Q96L96 1907 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 SLC25A45Q8N413 288 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 CTSGP08311 255 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 NDPQ00604 133 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-212ENST00000636194 Q6ZVH6 145 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 GPHA2Q96T91 129 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 TRBV10-2A0A0K0K1G8 114 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 COX7A2LO14548 114 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 DEFB131AP59861 70 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 FAM219BQ5XKK7 198 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 ZNF319Q9P2F9 582 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 CARHSP1Q9Y2V2 147 aaKnown RBP4.89□□□□□ -1.63
SCN1A-212ENST00000636194 LOC101059948A0A1B0GTJ6 334 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 FAM236DA0A1B0GTK5 79 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 SPART-AS1P0CW21 52 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 IGHV1-8P0DP01 117 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 FAM236CP0DP71 79 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 ATP5EP56381 51 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-212ENST00000636194 CR1LQ2VPA4 569 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 R3HDMLQ9H3Y0 253 aa4.89□□□□□ -1.63
SCN1A-212ENST00000636194 FNDC10F2Z333 226 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 COL24A1Q17RW2 1714 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 IGHV1-3A0A0C4DH29 117 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 RFLNBQ8N5W9 214 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 PYYP10082 97 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 COL22A1Q8NFW1 1626 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-212ENST00000636194 C5orf63A6NC05 138 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 NDUFS7O75251 213 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 ATP5G1P05496 136 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 LY96Q9Y6Y9 160 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 IGHV3-16A0A0C4DH30 117 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 BUB1B-PAK6H3BSN5 160 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 NDUFA1O15239 70 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 IGKV1D-12P01611 117 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 MSMBP08118 114 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 ZNF708P17019 499 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 CD24P25063 80 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 NUP35Q8NFH5 326 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 GTSF1Q8WW33 167 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 FAM110AQ9BQ89 295 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 MLST8Q9BVC4 326 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 Q8NFD4 153 aa4.88□□□□□ -1.63
SCN1A-212ENST00000636194 DKK1O94907 266 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 CELA2AP08217 269 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 IGHV1-2P23083 117 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 SPACA3Q8IXA5 215 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 SELENOKQ9Y6D0 94 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 LY75O60449 1722 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 SAA4P35542 130 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 CRYBA2P53672 197 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 SIP14410 1827 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 POLQO75417 2590 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 CSRP1P21291 193 aaKnown RBP4.87□□□□□ -1.63
SCN1A-212ENST00000636194 ZNF672Q499Z4 452 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-212ENST00000636194 HS3ST6Q96QI5 342 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 RPP25Q9BUL9 199 aaKnown RBP4.87□□□□□ -1.63
SCN1A-212ENST00000636194 FOXS1O43638 330 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 IGKV1-39P01597 117 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 IGKV1D-39P04432 117 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 PRR20EP86478 221 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 PRR20CP86479 221 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 PRR20DP86480 221 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 PRR20BP86481 221 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 PRR20AP86496 221 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 TRBV6-7A0A0A0MS04 114 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 SPINK13Q1W4C9 94 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 C16orf74Q96GX8 76 aa4.87□□□□□ -1.63
SCN1A-212ENST00000636194 ZC2HC1AQ96GY0 325 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms